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Table 3 Summary of binning performance for 31 ICoVeR-refined genome bins initially assigned with different binning algorithms for AD microbiome dataset

From: ICoVeR – an interactive visualization tool for verification and refinement of metagenomic bins

Binning algorithm

Average completeness (%)

Average contamination (%)

F1 (%)

MetaBAT_1

66.3

1.4

75.4

MetaBAT_2

70.4

2.2

79.3

MyCC

78.3

8.9

82.5

CONCOCTa

87.3

42.7

56.9

ICoVeR

76.6

1.8

84.4

  1. aThe relatively lower performance of CONCOCT on the AD microbiome dataset may be attributed to the loss of precision due to insufficient number of samples analysed (accuracy starts to decrease below 50 samples). Results for ICoVeR are highlighted in bold font
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BMC Bioinformatics

ISSN: 1471-2105

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