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Fig. 2 | BMC Bioinformatics

Fig. 2

From: CIPHER: a flexible and extensive workflow platform for integrative next-generation sequencing data analysis and genomic regulatory element prediction

Fig. 2

Brief visual representation of CIPHER’s two stage workflows. a Fastq files are trimmed of adapters and low quality reads using BBDuk, and then mapped to the reference genome using user’s preferred aligner. b Mapped reads are then run through a downstream analysis pipeline that reveals biological functions and is dependent on the type of dataset input. See text for complete details

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BMC Bioinformatics

ISSN: 1471-2105

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