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Fig. 1 | BMC Bioinformatics

Fig. 1

From: ODG: Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding

Fig. 1

Example of the internal structure of ODG as represented by Neo4J. Here we can see a PFAM domain (red) that has been identified in 2 Glycine max genes (Glyma…) and 1 Medicago truncatula gene (Medtr…). We can see that this PFAM domain is associated with the GO Terms, represented in yellow, cell differentiation, cytoplasm, and nucleus. The GO Term collenchyma cell differentiation is also a cell differentiation GO term, as determined from the imported definitions from the Gene Ontology consortium. Because of the relationships ODG is able to assign additional annotation to these genes based on a known protein domain family. The query was initiated by looking for genes which may be associated with collenchyma cell differentiation

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BMC Bioinformatics

ISSN: 1471-2105

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