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Table 1 Clustered graph metrics

From: A proximity-based graph clustering method for the identification and application of transcription factor clusters

 

ChIP-seq

ENCODE-motif

FPR

0.1

0.01

0.001

0.0001

0.1

0.01

0.001

0.0001

Nodes

111

585

Edges Filtered

3032

3429

3973

4349

132141

146638

155684

160755

Pct. Edges Filtered

48.8

55.2

63.9

69.6

77.1

85.6

90.8

93.8

Clusters

10

11

10

12

51

52

54

51

Med. Nodes per Cluster

6

6

4.5

6

5

5

5

4

Max. Nodes per Cluster

36

25

37

25

135

143

129

139

Unclustered Pct.

18.0

13.5

13.5

15.3

0

0.342

1.19

3.42