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Table 1 The Pearson correlation coefficient and R2 score between three methods and GO-based similarity

From: Measuring phenotype-phenotype similarity through the interactome

GO term

Measure

 

Ontology-based

Menche

PhenoNet

BP

PCC

Median

0.58

0.82

0.96

  

Mean

0.66

0.89

0.96

 

R 2

Median

0.35

0.69

0.93

  

Mean

0.43

0.79

0.92

MF

PCC

Median

0.43

0.61

0.94

  

Mean

0.48

0.66

0.95

 

R 2

Median

0.17

0.37

0.87

  

Mean

0.23

0.44

0.91

  1. The highest values were highlighted in boldface
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BMC Bioinformatics

ISSN: 1471-2105

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