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Table 1 The Pearson correlation coefficient and R2 score between three methods and GO-based similarity

From: Measuring phenotype-phenotype similarity through the interactome

GO term Measure   Ontology-based Menche PhenoNet
BP PCC Median 0.58 0.82 0.96
   Mean 0.66 0.89 0.96
  R 2 Median 0.35 0.69 0.93
   Mean 0.43 0.79 0.92
MF PCC Median 0.43 0.61 0.94
   Mean 0.48 0.66 0.95
  R 2 Median 0.17 0.37 0.87
   Mean 0.23 0.44 0.91
  1. The highest values were highlighted in boldface