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Table 1 Sample sets that were used to validate the performance of HGT-ID

From: HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data

Sample Set Possible Virus Data type No. of Samples Ref
1. Cervical cell lines and cervical carcinoma Human papillomavirus WGS 4 WGS [28]
2. Hepatocellular carcinoma Hepatitis B virus WGS 13 WGS [10]
3. TCGA Breast invasive carcinoma NA WGS 220 WGS [29]
4. Hepatocellular carcinoma Hepatitis B virus WGS + RNA-Seq 7 WGS + 7 RNA-Seq https://cancergenome.nih.gov/