BMC Bioinformatics

Table 5 Viral HGT events detected by HGT-ID algorithm between paired TCGA HCC tumor and normal samples via WGS and RNA-Seq datasets

From: HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data

Sample ID	WGS-T	WGS-N	RNA-T	RNA-N	Common HGT
TCGA-BW-A5NP	11	0	2	NA	0
TCGA-CC-5262	3	0	2	NA	2
TCGA-CC-A1HT	5	0	2	NA	2
TCGA-DD-A1EH	0	0	0	2	NA
TCGA-DD-A1EI	2	0	1	2	1
TCGA-DD-A1EL	17	0	1	2	1
TCGA-G3-A3CK	4	0	0	NA	0

T stands for primary solid tumor and N for matched solid normal tissue. Only 3 of the 7patients had RNA-Seq data for matched normal tissue. The “Common HGT” column contains the number of events that were identified in both WGS and RNA-Seq for the primary tumor (T)

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ISSN: 1471-2105

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