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Table 5 Viral HGT events detected by HGT-ID algorithm between paired TCGA HCC tumor and normal samples via WGS and RNA-Seq datasets

From: HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data

Sample ID WGS-T WGS-N RNA-T RNA-N Common HGT
TCGA-BW-A5NP 11 0 2 NA 0
TCGA-CC-5262 3 0 2 NA 2
TCGA-CC-A1HT 5 0 2 NA 2
TCGA-DD-A1EH 0 0 0 2 NA
TCGA-DD-A1EI 2 0 1 2 1
TCGA-DD-A1EL 17 0 1 2 1
TCGA-G3-A3CK 4 0 0 NA 0
  1. T stands for primary solid tumor and N for matched solid normal tissue. Only 3 of the 7patients had RNA-Seq data for matched normal tissue. The “Common HGT” column contains the number of events that were identified in both WGS and RNA-Seq for the primary tumor (T)