Fig. 5
From: Similarities and differences between variants called with human reference genome HG19 or HG38
Depth distribution of the converted and not converted SNVs identified from BWA alignment. The number of SNVs (y-axis) is plotted against depth (x-axis) for SNVs called using FreeBayes (blue), HC (magenta), ISAAC (red), and SAMtools (cyan). The solid lines are conversion results from HG19 to HG38. The dotted lines are conversion results from HG38 to HG19. a Successfully converted SNVs using CrossMap. b SNVs which were not successfully converted using CrossMap. c Successfully converted SNVs using Picard. d SNVs which were not successfully converted using Picard