Table 3 Predicted conserved and exclusive LEs for two clustered groups: vertebrate and invertebrate iridovirus subfamiliese. (*N/A represents the predicted segments possessing missing residues among the five virtual structures)
From: A voting mechanism-based linear epitope prediction system for the host-specific Iridoviridae family
Iridoviridae groups | Predictive LEs of representative peptide | Residue Location | RMSDs of structural alignment(Å) | |
|---|---|---|---|---|
Iridoviridae family (Conserved LEs) | KAVGYDNMIGN | (IIV) | Iridovirus:145~155 | 1.233 |
KRNGYDNMIGN | Chloriridovirus:46~56 | |||
KRIGYDNMIGN | (VIV) | Lymphocystivirus:146~156 | 0.063 | |
KRIGYDNMIGN | Megalocystivirus:146~156 | |||
KQSGYNKMIGM | Ranavirus:141~151 | |||
SNYTTASPVITSTT | (IIV) | Iridovirus:323~336 | 2.685 | |
SNYGTSSPVVSGTS | Chloriridovirus:222~233 | |||
SNYTSSSPVIFDGG | (VIV) | Lymphocystivirus:315~327 | 0.268 | |
SNYTCVTPVNGPGN | Megalocystivirus:320~332 | |||
SNYTAASPVYVNNK | Ranavirus:311~323 | |||
RLNHMGSD | (IIV) | Iridovirus:360~367 | 1.792 | |
RLGTMGSD | Chloriridovirus:258~265 | |||
RLNEMGSE | (VIV) | Lymphocystivirus:354~359 | 0.231 | |
RLANMGVE | Megalocystivirus:356~363 | |||
RLHQMGVD | Ranavirus:346~353 | |||
GAAGTGPAGSGQNFPQT | (IIV) | Iridovirus:424~442 | 2.385 | |
ASTGAGDGAGANYNQS | Chloriridovirus:324~339 | |||
TAGGNGGNTSG | (VIV) | Lymphocystivirus:418~428 | 0.308 | |
AAAGGGNNNSG | Megalocystivirus: 422~432 | |||
TAAGGGGNGTG | Ranavirus:412~422 | |||
VIV (Exclusive LEs) | TIDMTQPVDS TSDMTNPTPA RSDLVGGITN | Lymphocystivirus:157~166 | N/A* | |
Megalocystivirus: 157~166 | ||||
Ranavirus:152~161 | ||||
IIV (Exclusive LEs) | VALPTAALPYNE VSLPTAALPYNE | Iridovirus:193~203 | 2.683 | |
Chloriridovirus:92~102 | ||||
VASQTVVPVVG TTGNPYQTIDV | Iridovirus:226~236 | N/A* | ||
Chloriridovirus:125~135 | ||||