Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm

BMC Bioinformatics

Table 6 List of retrieved peptides for the AG protease case study using sequence query

PDB id	Description	Protein chain	Peptide chain
1ekb	Bovine enteropeptidase	B	A
1ekb	Bovine enteropeptidase	B	C
2stb	Salmon trypsin	I	E
2sta	Salmon trypsin	I	E
3qgn	Human thrombin	A	B
2zdv	Human thrombin	L	H
1ca8	Human thrombin	A	B
1ca8	Human thrombin	A	B
4dii	Human thrombin	L	H
4dih	Human thrombin	L	H
4lz1	Human thrombin	B	A

ISSN: 1471-2105