Table 8 HADDOCK score and RMSD for the selected models for each peptide chain in the sequence based experiment
From: Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm
PDB id | Chain | HADDOCK iRMSD | HADDOCK score | S1 closest residue |
|---|---|---|---|---|
1ekb | C | 2.564 | \(-\) 49.202 | – |
1ekb | A | 2.499 | \(-\) 63.477 | – |
2stb | I | 0.000 | \(-\) 86.803 | – |
2sta | I | 4.275 | \(-\) 81.387 | – |
3qgn | A | 0.000 | \(-\) 97.979 | CYS (3.9 Å) |
2zdv | L | 0.000 | \(-\) 100.560 | GLU (7.4 Å) |
1ca8 | A | 1.530 | \(-\) 102.975 | CYS (5.1 Å) |
1ca8 | C | 1.158 | \(-\) 75.138 | – |
4dii | L | 2.598 | \(-\) 95.836 | CYS (4.4 Å) |
4dih | L | 1.508 | \(-\) 95.317 | ARG (5.4 Å) |