Table 2 Results: \(\sigma _{z}=0.5\)
No.TFs | Scenario | Feature selection of genes | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TP | TN | Ave | |||||||||||
Pro | NW.P | EL | LA | Pro | NW.P | EL | LA | Pro | NW.P | EL | LA | ||
5 | 1 | 0.98 | 0.76 | 0.42 | 0.42 | 0.93 | 0.69 | 0.87 | 0.87 | 0.96 | 0.72 | 0.65 | 0.64 |
| Â | 2 | 0.98 | 0.73 | 0.41 | 0.39 | 0.93 | 0.65 | 0.83 | 0.88 | 0.95 | 0.69 | 0.62 | 0.63 |
| Â | 3 | 0.99 | 0.67 | 0.41 | 0.40 | 0.93 | 0.73 | 0.85 | 0.86 | 0.96 | 0.70 | 0.63 | 0.63 |
| Â | 4 | 0.98 | 0.74 | 0.44 | 0.41 | 0.94 | 0.71 | 0.83 | 0.87 | 0.96 | 0.73 | 0.64 | 0.64 |
10 | 1 | 0.98 | 0.73 | 0.36 | 0.36 | 0.93 | 0.77 | 0.93 | 0.93 | 0.95 | 0.75 | 0.65 | 0.65 |
| Â | 2 | 0.97 | 0.77 | 0.36 | 0.34 | 0.93 | 0.81 | 0.93 | 0.93 | 0.95 | 0.79 | 0.64 | 0.64 |
| Â | 3 | 0.99 | 0.75 | 0.37 | 0.35 | 0.93 | 0.78 | 0.92 | 0.94 | 0.96 | 0.76 | 0.65 | 0.65 |
| Â | 4 | 0.97 | 0.71 | 0.35 | 0.34 | 0.94 | 0.85 | 0.94 | 0.94 | 0.96 | 0.78 | 0.64 | 0.64 |
25 | 1 | 0.98 | 0.74 | 0.34 | 0.34 | 0.93 | 0.96 | 0.97 | 0.97 | 0.96 | 0.85 | 0.65 | 0.65 |
| Â | 2 | 0.97 | 0.66 | 0.31 | 0.30 | 0.94 | 0.97 | 0.96 | 0.97 | 0.96 | 0.81 | 0.64 | 0.63 |
| Â | 3 | 0.98 | 0.72 | 0.33 | 0.32 | 0.94 | 0.97 | 0.97 | 0.97 | 0.96 | 0.84 | 0.65 | 0.65 |
| Â | 4 | 0.97 | 0.70 | 0.32 | 0.32 | 0.94 | 0.97 | 0.97 | 0.97 | 0.95 | 0.83 | 0.64 | 0.64 |
50 | 1 | 0.98 | 0.76 | 0.31 | 0.31 | 0.94 | 0.97 | 0.98 | 0.97 | 0.96 | 0.87 | 0.64 | 0.64 |
| Â | 2 | 0.96 | 0.76 | 0.29 | 0.28 | 0.94 | 0.98 | 0.98 | 0.98 | 0.95 | 0.87 | 0.63 | 0.63 |
| Â | 3 | 0.99 | 0.75 | 0.32 | 0.32 | 0.94 | 0.97 | 0.98 | 0.98 | 0.96 | 0.86 | 0.65 | 0.65 |
| Â | 4 | 0.98 | 0.74 | 0.30 | 0.31 | 0.94 | 0.97 | 0.98 | 0.98 | 0.96 | 0.86 | 0.64 | 0.64 |
100 | 1 | 0.98 | 0.75 | 0.31 | 0.30 | 0.95 | 0.99 | 0.99 | 0.99 | 0.96 | 0.87 | 0.65 | 0.65 |
| Â | 2 | 0.96 | 0.74 | 0.28 | 0.27 | 0.95 | 0.98 | 0.99 | 0.99 | 0.96 | 0.86 | 0.63 | 0.63 |
| Â | 3 | 0.98 | 0.74 | 0.30 | 0.29 | 0.95 | 0.99 | 0.99 | 0.99 | 0.96 | 0.87 | 0.64 | 0.64 |
| Â | 4 | 0.98 | 0.78 | 0.28 | 0.28 | 0.95 | 0.98 | 0.99 | 0.99 | 0.96 | 0.88 | 0.63 | 0.63 |
No.TFs | Scenario | Feature selection of edges | Prediction accuracy | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TP | TN | Ave | MSE | ||||||||||
Pro | NW.P | Pro | NW.P | Pro | NW.P | Pro | NW.P | EL | LA | XGB | NN | ||
5 | 1 | 1.00 | 1.00 | 1.00 | 0.92 | 1.00 | 0.96 | 0.522 | 0.558 | 0.536 | 0.531 | 9.596 | 2.991 |
| Â | 2 | 1.00 | 1.00 | 1.00 | 0.92 | 1.00 | 0.96 | 0.551 | 0.583 | 0.550 | 0.551 | 9.169 | 3.001 |
| Â | 3 | 1.00 | 1.00 | 1.00 | 0.92 | 1.00 | 0.96 | 0.539 | 0.588 | 0.550 | 0.546 | 11.543 | 3.633 |
| Â | 4 | 1.00 | 1.00 | 1.00 | 0.93 | 1.00 | 0.96 | 0.538 | 0.579 | 0.607 | 0.595 | 10.022 | 3.520 |
10 | 1 | 1.00 | 1.00 | 1.00 | 0.96 | 1.00 | 0.98 | 0.552 | 0.597 | 0.612 | 0.612 | 10.493 | 3.994 |
| Â | 2 | 1.00 | 1.00 | 1.00 | 0.96 | 1.00 | 0.98 | 0.541 | 0.566 | 0.523 | 0.524 | 8.880 | 3.960 |
| Â | 3 | 1.00 | 1.00 | 1.00 | 0.96 | 1.00 | 0.98 | 0.551 | 0.573 | 0.577 | 0.573 | 11.017 | 4.734 |
| Â | 4 | 1.00 | 1.00 | 1.00 | 0.96 | 1.00 | 0.98 | 0.540 | 0.571 | 0.605 | 0.602 | 9.706 | 4.816 |
25 | 1 | 1.00 | 1.00 | 1.00 | 0.98 | 1.00 | 0.99 | 0.597 | 0.621 | 0.567 | 0.566 | 11.130 | 6.067 |
| Â | 2 | 1.00 | 1.00 | 1.00 | 0.98 | 1.00 | 0.99 | 0.552 | 0.580 | 0.608 | 0.610 | 10.151 | 6.256 |
| Â | 3 | 1.00 | 1.00 | 1.00 | 0.98 | 1.00 | 0.99 | 0.519 | 0.538 | 0.613 | 0.612 | 12.434 | 7.857 |
| Â | 4 | 1.00 | 1.00 | 1.00 | 0.98 | 1.00 | 0.99 | 0.552 | 0.579 | 0.623 | 0.623 | 10.790 | 7.508 |
50 | 1 | 1.00 | 1.00 | 1.00 | 0.99 | 1.00 | 1.00 | 0.600 | 0.638 | 0.637 | 0.637 | 10.549 | 12.227 |
| Â | 2 | 1.00 | 1.00 | 1.00 | 0.99 | 1.00 | 1.00 | 0.570 | 0.598 | 0.639 | 0.626 | 9.595 | 11.736 |
| Â | 3 | 1.00 | 1.00 | 1.00 | 0.99 | 1.00 | 1.00 | 0.579 | 0.601 | 0.564 | 0.565 | 12.086 | 14.921 |
| Â | 4 | 1.00 | 1.00 | 1.00 | 0.99 | 1.00 | 1.00 | 0.537 | 0.559 | 0.612 | 0.617 | 10.722 | 14.226 |
100 | 1 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.630 | 0.647 | 0.612 | 0.609 | 12.256 | 23.636 |
| Â | 2 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.682 | 0.684 | 0.631 | 0.6338 | 11.634 | 21.663 |
| Â | 3 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.590 | 0.604 | 0.617 | 0.618 | 14.334 | 29.831 |
| Â | 4 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.582 | 0.585 | 0.645 | 0.639 | 12.218 | 27.657 |