Table 3 Results: \(\sigma _{z}=1\)
No.TFs | Scenario | Feature selection of genes | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TP | TN | Ave | |||||||||||
Pro | NW.P | EL | LA | Pro | NW.P | EL | LA | Pro | NW.P | EL | LA | ||
5 | 1 | 0.99 | 0.71 | 0.43 | 0.41 | 0.90 | 0.71 | 0.84 | 0.86 | 0.95 | 0.71 | 0.64 | 0.64 |
| Â | 2 | 0.98 | 0.79 | 0.43 | 0.39 | 0.92 | 0.61 | 0.86 | 0.90 | 0.95 | 0.70 | 0.64 | 0.65 |
| Â | 3 | 0.99 | 0.78 | 0.44 | 0.42 | 0.91 | 0.63 | 0.84 | 0.88 | 0.95 | 0.71 | 0.64 | 0.65 |
| Â | 4 | 0.97 | 0.70 | 0.42 | 0.41 | 0.90 | 0.65 | 0.87 | 0.87 | 0.94 | 0.68 | 0.64 | 0.64 |
10 | 1 | 0.98 | 0.69 | 0.40 | 0.37 | 0.90 | 0.79 | 0.91 | 0.94 | 0.94 | 0.74 | 0.65 | 0.65 |
| Â | 2 | 0.96 | 0.75 | 0.35 | 0.35 | 0.92 | 0.75 | 0.94 | 0.92 | 0.94 | 0.75 | 0.65 | 0.64 |
| Â | 3 | 0.98 | 0.71 | 0.39 | 0.38 | 0.92 | 0.78 | 0.93 | 0.93 | 0.95 | 0.74 | 0.66 | 0.66 |
| Â | 4 | 0.96 | 0.71 | 0.35 | 0.36 | 0.92 | 0.84 | 0.93 | 0.92 | 0.94 | 0.77 | 0.64 | 0.64 |
25 | 1 | 0.98 | 0.74 | 0.33 | 0.32 | 0.92 | 0.96 | 0.97 | 0.97 | 0.95 | 0.85 | 0.65 | 0.65 |
| Â | 2 | 0.97 | 0.73 | 0.33 | 0.32 | 0.92 | 0.97 | 0.96 | 0.97 | 0.95 | 0.85 | 0.64 | 0.64 |
| Â | 3 | 0.98 | 0.72 | 0.33 | 0.32 | 0.92 | 0.96 | 0.97 | 0.97 | 0.95 | 0.84 | 0.65 | 0.65 |
| Â | 4 | 0.97 | 0.65 | 0.32 | 0.31 | 0.92 | 0.97 | 0.96 | 0.96 | 0.95 | 0.81 | 0.64 | 0.64 |
50 | 1 | 0.98 | 0.71 | 0.32 | 0.31 | 0.93 | 0.98 | 0.98 | 0.98 | 0.95 | 0.84 | 0.65 | 0.64 |
| Â | 2 | 0.97 | 0.69 | 0.29 | 0.28 | 0.93 | 0.98 | 0.98 | 0.98 | 0.95 | 0.83 | 0.63 | 0.63 |
| Â | 3 | 0.98 | 0.76 | 0.31 | 0.30 | 0.93 | 0.98 | 0.98 | 0.98 | 0.96 | 0.87 | 0.64 | 0.64 |
| Â | 4 | 0.98 | 0.75 | 0.31 | 0.31 | 0.93 | 0.98 | 0.98 | 0.98 | 0.95 | 0.86 | 0.64 | 0.64 |
100 | 1 | 0.98 | 0.76 | 0.28 | 0.28 | 0.94 | 0.99 | 0.99 | 0.99 | 0.96 | 0.87 | 0.63 | 0.64 |
| Â | 2 | 0.96 | 0.75 | 0.26 | 0.26 | 0.94 | 0.99 | 0.99 | 0.99 | 0.95 | 0.87 | 0.62 | 0.63 |
| Â | 3 | 0.98 | 0.73 | 0.28 | 0.27 | 0.94 | 0.99 | 0.99 | 0.99 | 0.96 | 0.86 | 0.63 | 0.63 |
| Â | 4 | 0.97 | 0.74 | 0.28 | 0.28 | 0.94 | 0.99 | 0.98 | 0.98 | 0.95 | 0.86 | 0.63 | 0.63 |
No.TFs | Scenario | Feature selection of edges | Prediction accuracy | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TP | TN | Ave | MSE | ||||||||||
Pro | NW.P | Pro | NW.P | Pro | NW.P | Pro | NW.P | EL | LA | XGB | NN | ||
5 | 1 | 1.00 | 1.00 | 1.00 | 0.92 | 1.00 | 0.96 | 1.177 | 1.197 | 1.128 | 1.129 | 10.422 | 3.691 |
| Â | 2 | 1.00 | 1.00 | 1.00 | 0.93 | 1.00 | 0.96 | 1.053 | 1.102 | 1.204 | 1.202 | 8.913 | 3.725 |
| Â | 3 | 1.00 | 1.00 | 1.00 | 0.92 | 1.00 | 0.96 | 1.074 | 1.121 | 1.308 | 1.300 | 11.849 | 4.357 |
| Â | 4 | 1.00 | 1.00 | 1.00 | 0.92 | 1.00 | 0.96 | 1.052 | 1.061 | 1.179 | 1.167 | 10.328 | 4.481 |
10 | 1 | 1.00 | 1.00 | 1.00 | 0.96 | 1.00 | 0.98 | 1.071 | 1.121 | 1.219 | 1.200 | 10.942 | 4.846 |
| Â | 2 | 1.00 | 1.00 | 1.00 | 0.96 | 1.00 | 0.98 | 1.121 | 1.183 | 1.104 | 1.109 | 9.856 | 4.901 |
| Â | 3 | 1.00 | 1.00 | 1.00 | 0.96 | 1.00 | 0.98 | 1.150 | 1.213 | 1.225 | 1.221 | 11.782 | 5.420 |
| Â | 4 | 1.00 | 1.00 | 1.00 | 0.96 | 1.00 | 0.98 | 1.034 | 1.089 | 1.254 | 1.236 | 10.697 | 5.556 |
25 | 1 | 1.00 | 1.00 | 1.00 | 0.98 | 1.00 | 0.99 | 1.123 | 1.195 | 1.188 | 1.194 | 11.915 | 6.768 |
| Â | 2 | 1.00 | 1.00 | 1.00 | 0.98 | 1.00 | 0.99 | 1.021 | 1.089 | 1.199 | 1.190 | 10.609 | 6.700 |
| Â | 3 | 1.00 | 1.00 | 1.00 | 0.98 | 1.00 | 0.99 | 1.061 | 1.113 | 1.266 | 1.264 | 12.294 | 8.391 |
| Â | 4 | 1.00 | 1.00 | 1.00 | 0.98 | 1.00 | 0.99 | 1.112 | 1.153 | 1.216 | 1.217 | 11.123 | 8.465 |
50 | 1 | 1.00 | 1.00 | 1.00 | 0.99 | 1.00 | 1.00 | 1.080 | 1.113 | 1.299 | 1.294 | 11.649 | 12.813 |
| Â | 2 | 1.00 | 1.00 | 1.00 | 0.99 | 1.00 | 1.00 | 1.103 | 1.132 | 1.218 | 1.221 | 10.737 | 12.295 |
| Â | 3 | 1.00 | 1.00 | 1.00 | 0.99 | 1.00 | 1.00 | 1.089 | 1.114 | 1.278 | 1.270 | 13.227 | 15.542 |
| Â | 4 | 1.00 | 1.00 | 1.00 | 0.99 | 1.00 | 1.00 | 1.158 | 1.190 | 1.266 | 1.252 | 11.878 | 14.920 |
100 | 1 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.210 | 1.189 | 1.191 | 1.192 | 13.263 | 24.151 |
| Â | 2 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.169 | 1.183 | 1.244 | 1.240 | 12.117 | 22.707 |
| Â | 3 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.199 | 1.141 | 1.233 | 1.232 | 15.166 | 30.391 |
| Â | 4 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.187 | 1.158 | 1.218 | 1.209 | 13.138 | 27.887 |