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Fig. 2 | BMC Bioinformatics

Fig. 2

From: TMbed: transmembrane proteins predicted through language model embeddings

Fig. 2

New membrane proteins. PDB structures for probable flagellin 1 (Q9YAN8; 7TXI [73]), protein-serine O-palmitoleoyltransferase porcupine (Q9H237; 7URD [74]), choline transporter-like protein 1 (Q8WWI5; 7WWB [75]), S-layer protein SlpA (Q9RRB6; 7ZGY [76]), and membrane protein (P0DTC5; 8CTK [77]). Transmembrane segments (dark purple) predicted by TMbed; membrane boundaries (dotted lines: red = outside, blue = inside) predicted by the PPM [45] web server. Images created using Mol* Viewer [71]

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