Table 3 Per-segment performance for TMB (transmembrane beta strands). *
From: TMbed: transmembrane proteins predicted through language model embeddings
| Â | TMB (57/768) | ||||
|---|---|---|---|---|---|
Recall (%) | Precision (%) | Qok (%) | Qnum (%) | Qtop (%) | |
TMbed | 95.0 ± 4.3 | 99.2 ± 0.7 | 80.5 ± 11.4 | 88.1 ± 6.9 | 98.1 ± 3.8 |
DeepTMHMM | 85.9 ± 6.6 | 92.5 ± 4.7 | 46.1 ± 7.6 | 74.3 ± 13.0 | 97.2 ± 4.4 |
BOCTOPUS2 | 85.3 ± 9.2 | 96.6 ± 2.0 | 56.6 ± 18.9 | 71.2 ± 11.8 | 98.0 ± 2.0 |
BetAware-Deep | 67.1 ± 6.5 | 62.2 ± 11.4 | 8.7 ± 5.3 | 60.9 ± 14.1 | 95.7 ± 5.4 |
PRED-TMBB2 (MSA) | 85.4 ± 1.9 | 75.6 ± 4.8 | 18.4 ± 15.0 | 44.5 ± 26.7 | 95.9 ± 3.4 |
PROFtmb | 78.2 ± 10.1 | 78.0 ± 6.9 | 20.2 ± 12.8 | 46.6 ± 11.7 | 97.2 ± 1.0 |