Volume 10 Supplement 13

Highlights from the Fifth International Society for Computational Biology (ISCB) Student Council Symposium

Meeting abstracts

Edited by Thomas Abeel

Fifth International Society for Computational Biology (ISCB) Student Council Symposium. Go to conference site.

Stockholm, Sweden27 June 2009

Concatenated PDF 10S13

Content type: Introduction

Highlights from the 5^th International Society for Computational Biology Student Council Symposium at the 17^th Annual International Conference on Intelligent Systems for Molecular Biology and the 8^th European Conference on Computational Biology

Authors: Thomas Abeel, Jeroen de Ridder and Lucia Peixoto

Citation: BMC Bioinformatics 2009 10(Suppl 13):I1

Published on: 19 October 2009
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Content type: Oral presentation

KIRMES: kernel-based identification of regulatory modules in euchromatic sequences

Authors: Sebastian J Schultheiss, Wolfgang Busch, Jan Lohmann, Oliver Kohlbacher and Gunnar Rätsch

Citation: BMC Bioinformatics 2009 10(Suppl 13):O1

Published on: 19 October 2009
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Content type: Oral presentation

Paired-end read length lower bounds for genome re-sequencing

Authors: Rayan Chikhi and Dominique Lavenier

Citation: BMC Bioinformatics 2009 10(Suppl 13):O2

Published on: 19 October 2009
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Content type: Oral presentation

Prediction of super-secondary structure in α-helical and β-barrel transmembrane proteins

Authors: Van Du Tran, Philippe Chassignet and Jean-Marc Steyaert

Citation: BMC Bioinformatics 2009 10(Suppl 13):O3

Published on: 19 October 2009
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Content type: Oral presentation

Core stemness mechanisms revealed through homology

Authors: Martina Koeva, E Camilla Forsberg and Josh M Stuart

Citation: BMC Bioinformatics 2009 10(Suppl 13):O4

Published on: 19 October 2009
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Content type: Oral presentation

Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life

Authors: Phil Hyoun Lee, Jae-Yoon Jung and Hagit Shatkay

Citation: BMC Bioinformatics 2009 10(Suppl 13):O5

Published on: 19 October 2009
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Content type: Oral presentation

Looking for chromosome spatial organization rules in microarray gene expression data

Authors: Teresa Szczepińska and Krzysztof Pawłowski

Citation: BMC Bioinformatics 2009 10(Suppl 13):O6

Published on: 19 October 2009
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Content type: Oral presentation

Visualization of large microarray experiments with space maps

Authors: Nils Gehlenborg and Alvis Brazma

Citation: BMC Bioinformatics 2009 10(Suppl 13):O7

Published on: 19 October 2009
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Content type: Poster presentation

Probabilistic retrieval and visualization of biologically relevant microarray experiments

Authors: José Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma and Samuel Kaski

Citation: BMC Bioinformatics 2009 10(Suppl 13):P1

Published on: 19 October 2009
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Content type: Poster presentation

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation

Authors: Inken Wohlers, Lars Petzold, Francisco S Domingues and Gunnar W Klau

Citation: BMC Bioinformatics 2009 10(Suppl 13):P2

Published on: 19 October 2009
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Content type: Poster presentation

A method for validation for clustering of phenotypic gene knockdown profiles using protein-protein interactions information

Authors: Nikolay Samusik, Yannis Kalaidzidis and Marino Zerial

Citation: BMC Bioinformatics 2009 10(Suppl 13):P3

Published on: 19 October 2009
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Content type: Poster presentation

Phylogenomic inference of functional divergence

Authors: Tom A Williams, Brian E Caffrey, Xiaowei Jiang, Christina Toft and Mario A Fares

Citation: BMC Bioinformatics 2009 10(Suppl 13):P4

Published on: 19 October 2009
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Content type: Poster presentation

Transcript quantification with RNA-Seq data

Authors: Regina Bohnert, Jonas Behr and Gunnar Rätsch

Citation: BMC Bioinformatics 2009 10(Suppl 13):P5

Published on: 19 October 2009
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Content type: Poster presentation

Structure and function analysis of flexible alignment regions in proteins

Authors: Walter Pirovano, Anneke van der Reijden, K Anton Feenstra and Jaap Heringa

Citation: BMC Bioinformatics 2009 10(Suppl 13):P6

Published on: 19 October 2009
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Content type: Poster presentation

Computational methods to identify novel methyltransferases

Authors: Tanya C Petrossian and Steven G Clarke

Citation: BMC Bioinformatics 2009 10(Suppl 13):P7

Published on: 19 October 2009
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Highlights from the Fifth International Society for Computational Biology (ISCB) Student Council Symposium

Meeting abstracts

Highlights from the 5^th International Society for Computational Biology Student Council Symposium at the 17^th Annual International Conference on Intelligent Systems for Molecular Biology and the 8^th European Conference on Computational Biology

KIRMES: kernel-based identification of regulatory modules in euchromatic sequences

Paired-end read length lower bounds for genome re-sequencing

Prediction of super-secondary structure in α-helical and β-barrel transmembrane proteins

Core stemness mechanisms revealed through homology

Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life

Looking for chromosome spatial organization rules in microarray gene expression data

Visualization of large microarray experiments with space maps

Probabilistic retrieval and visualization of biologically relevant microarray experiments

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation

A method for validation for clustering of phenotypic gene knockdown profiles using protein-protein interactions information

Phylogenomic inference of functional divergence

Transcript quantification with RNA-Seq data

Structure and function analysis of flexible alignment regions in proteins

Computational methods to identify novel methyltransferases

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