Volume 11 Supplement 5

Workshop on Advances in Bio Text Mining

Meeting abstracts

Edited by Thomas Abeel and Sofie Van Landeghem

Workshop on Advances in Bio Text Mining. Go to conference site.

Ghent, Belgium10-11 May 2010

Entities, relations, events: representing biomolecular semantics

Authors: Sampo Pyysalo

Citation: BMC Bioinformatics 2010 11(Suppl 5):O6

Content type: Oral presentation Published on: 20 September 2010
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Highlights of the BioTM 2010 workshop on advances in bio text mining

Authors: Thomas Abeel, Sofie Van Landeghem, Roser Morante, Vincent Van Asch, Yves Van de Peer, Walter Daelemans and Yvan Saeys

Citation: BMC Bioinformatics 2010 11(Suppl 5):I1

Content type: Introduction Published on: 6 October 2010
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The PPI affix dictionary (PPIAD) and BioMethod Lexicon: importance of affixes and tags for recognition of entity mentions and experimental protein interactions

Authors: Martin Krallinger, Ashish V Tendulkar, Florian Leitner, Andrew Chatr-aryamontri and Alfonso Valencia

Citation: BMC Bioinformatics 2010 11(Suppl 5):O1

Content type: Oral presentation Published on: 6 October 2010
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Event extraction on PubMed scale

Authors: Filip Ginter, Jari Björne and Sampo Pyysalo

Citation: BMC Bioinformatics 2010 11(Suppl 5):O2

Content type: Oral presentation Published on: 6 October 2010
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Integrating text mining into high-throughput assay analysis

Authors: K Bretonnel Cohen

Citation: BMC Bioinformatics 2010 11(Suppl 5):O3

Content type: Oral presentation Published on: 6 October 2010
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Pitfalls in applying text mining to scientific literature

Authors: Jean-Marc Neefs

Citation: BMC Bioinformatics 2010 11(Suppl 5):O4

Content type: Oral presentation Published on: 6 October 2010
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Integrating automated literature searches and text mining in biomarker discovery

Authors: Maté Ongenaert and Luc Dehaspe

Citation: BMC Bioinformatics 2010 11(Suppl 5):O5

Content type: Oral presentation Published on: 6 October 2010
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Functional variation of alternative splice forms in their protein interaction networks: a literature mining approach

Authors: Şenay Kafkas, Ekrem Varoğlu, Dietrich Rebholz-Schuhmann and Bahar Taneri

Citation: BMC Bioinformatics 2010 11(Suppl 5):P1

Content type: Poster presentation Published on: 6 October 2010
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Supporting the search for cross-context links by outlier detection methods

Authors: Borut Sluban and Nada Lavrač

Citation: BMC Bioinformatics 2010 11(Suppl 5):P2

Content type: Poster presentation Published on: 6 October 2010
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Semantic integration of isolation habitat and location in StrainInfo

Authors: Bert Verslyppe, Wim De Smet, Paul De Vos, Bernard De Baets and Peter Dawyndt

Citation: BMC Bioinformatics 2010 11(Suppl 5):P3

Content type: Poster presentation Published on: 6 October 2010
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Identification of concepts bridging diverse biomedical domains

Authors: Matjaž Juršič, Igor Mozetič, Miha Grčar, Bojan Cestnik and Nada Lavrač

Citation: BMC Bioinformatics 2010 11(Suppl 5):P4

Content type: Poster presentation Published on: 6 October 2010
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Species identification for gene name normalization

Authors: Illés Solt, Domonkos Tikk and Ulf Leser

Citation: BMC Bioinformatics 2010 11(Suppl 5):P5

Content type: Poster presentation Published on: 6 October 2010
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BioLMiner and the BioCreative II.5 challenge

Authors: Yifei Chen, Feng Liu and Bernard Manderick

Citation: BMC Bioinformatics 2010 11(Suppl 5):P6

Content type: Poster presentation Published on: 6 October 2010
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Medie and Info-pubmed: 2010 update

Authors: Tomoko Ohta, Takuya Matsuzaki, Naoaki Okazaki, Makoto Miwa, Rune Sætre, Sampo Pyysalo and Jun’ichi Tsujii

Citation: BMC Bioinformatics 2010 11(Suppl 5):P7

Content type: Poster presentation Published on: 6 October 2010
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A fast and effective dependency graph kernel for PPI relation extraction

Authors: Domonkos Tikk, Peter Palaga and Ulf Leser

Citation: BMC Bioinformatics 2010 11(Suppl 5):P8

Content type: Poster presentation Published on: 6 October 2010
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Extracting drug-drug interactions from biomedical texts

Authors: Isabel Segura-Bedmar, Paloma Martínez and César de Pablo-Sánchez

Citation: BMC Bioinformatics 2010 11(Suppl 5):P9

Content type: Poster presentation Published on: 6 October 2010
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Workshop on Advances in Bio Text Mining

Meeting abstracts

Entities, relations, events: representing biomolecular semantics

Highlights of the BioTM 2010 workshop on advances in bio text mining

The PPI affix dictionary (PPIAD) and BioMethod Lexicon: importance of affixes and tags for recognition of entity mentions and experimental protein interactions

Event extraction on PubMed scale

Integrating text mining into high-throughput assay analysis

Pitfalls in applying text mining to scientific literature

Integrating automated literature searches and text mining in biomarker discovery

Functional variation of alternative splice forms in their protein interaction networks: a literature mining approach

Supporting the search for cross-context links by outlier detection methods

Semantic integration of isolation habitat and location in StrainInfo

Identification of concepts bridging diverse biomedical domains

Species identification for gene name normalization

BioLMiner and the BioCreative II.5 challenge

Medie and Info-pubmed: 2010 update

A fast and effective dependency graph kernel for PPI relation extraction

Extracting drug-drug interactions from biomedical texts

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