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Volume 11 Supplement 7

Ninth International Conference on Bioinformatics (InCoB2010): Bioinformatics

Proceedings

Edited by Christian Schönbach, Kenta Nakai, Tin Wee Tan and Shoba Ranganathan

Asia Pacific Bioinformatics Network (APBioNet) Ninth International Conference on Bioinformatics (InCoB2010). Go to conference site.

Tokyo, Japan26-28 September 2010

  1. The International Conference on Bioinformatics (InCoB), the annual conference of the Asia-Pacific Bioinformatics Network (APBioNet), is hosted in one of countries of the Asia-Pacific region. The 2010 conferenc...

    Authors: Christian Schönbach, Kenta Nakai, Tin Wee Tan and Shoba Ranganathan
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S1
  2. Effectors of Type III Secretion System (T3SS) play a pivotal role in establishing and maintaining pathogenicity in the host and therefore the identification of these effectors is important in understanding vir...

    Authors: Daniel Ming Ming Tay, Kunde Ramamoorthy Govindarajan, Asif M Khan, Terenze Yao Rui Ong, Hanif M Samad, Wei Wei Soh, Minyan Tong, Fan Zhang and Tin Wee Tan
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S4
  3. Homozygosity mapping is a powerful procedure that is capable of detecting recessive disease-causing genes in a few patients from families with a history of inbreeding. We report here a homozygosity mapping alg...

    Authors: Huqun*, Shun-ichiro Fukuyama, Hiroyuki Morino, Hiroshi Miyazawa, Tomoaki Tanaka, Tomoko Suzuki, Masakazu Kohda, Hideshi Kawakami, Yasushi Okazaki, Kuniaki Seyama and Koichi Hagiwara
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S5
  4. Orthologs are genes derived from the same ancestor gene loci after speciation events. Orthologous proteins usually have similar sequences and perform comparable biological functions. Therefore, ortholog identi...

    Authors: Ting-wen Chen, Timothy H Wu, Wailap V Ng and Wen-chang Lin
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S6
  5. In order to characterize mammalian intrinsically disordered domains (IDDs) we examined the patterns in their amino acid abundance as well as overrepresented local sequence motifs. We considered IDDs from mouse...

    Authors: Shunsuke Teraguchi, Ashwini Patil and Daron M Standley
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S7
  6. Protein-protein interactions (PPIs) play important roles in various cellular processes. However, the low quality of current PPI data detected from high-throughput screening techniques has diminished the potent...

    Authors: Min Wu, Xiaoli Li, Hon Nian Chua, Chee-Keong Kwoh and See-Kiong Ng
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S8
  7. Understanding cellular systems requires the knowledge of a protein's subcellular localization (SCL). Although experimental and predicted data for protein SCL are archived in various databases, SCL prediction r...

    Authors: Gaurav Kumar and Shoba Ranganathan
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S9
  8. Recent studies have found that overexpression of the High-mobility group box-1 (HMGB1) protein, in conjunction with its receptors for advanced glycation end products (RAGEs) and toll-like receptors (TLRs), is ...

    Authors: Haijun Gong, Paolo Zuliani, Anvesh Komuravelli, James R Faeder and Edmund M Clarke
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S10
  9. sRNAs, which belong to the non-coding RNA family and range from approximately 50 to 400 nucleotides, serve various important gene regulatory roles. Most are believed to be trans-regulating and function by being c...

    Authors: Timothy H Wu, Ian Yi-Feng Chang, Li-chieh Julie Chu, Hsuan-Cheng Huang and Wailap Victor Ng
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S11
  10. Mathematical modeling has been applied to the study and analysis of complex biological systems for a long time. Some processes in biological systems, such as the gene expression and feedback control in signal ...

    Authors: Wu Hsiung Wu, Feng Sheng Wang and Maw Shang Chang
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S12
  11. The Triplex cell vaccine is a cancer cellular vaccine that can prevent almost completely the mammary tumor onset in HER-2/neu transgenic mice. In a translational perspective, the activity of the Triplex vaccin...

    Authors: Marzio Pennisi, Francesco Pappalardo, Ariannna Palladini, Giordano Nicoletti, Patrizia Nanni, Pier-Luigi Lollini and Santo Motta
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S13
  12. In metagenomic sequence data, majority of sequences/reads originate from new or partially characterized genomes, the corresponding sequences of which are absent in existing reference databases. Since taxonomic...

    Authors: Tarini Shankar Ghosh, Monzoorul Haque M and Sharmila S Mande
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S14
  13. Nuclear factor kappa B (NF-κB) is a chief nuclear transcription factor that controls the transcription of various genes; and its activation is tightly controlled by Inhibitor kappa B kinase (IKK). The irregula...

    Authors: Shanthi Nagarajan, Hyunah Choo, Yong Seo Cho, Kye Jung Shin, Kwang-Seok Oh, Byung Ho Lee and Ae Nim Pae
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S15
  14. Human papillomaviruses (HPVs) are the most common on sexually transmitted viruses in the world. HPVs are responsible for a large spectrum of deseases, both benign and malignant. The certain types of HPV are in...

    Authors: Usman Sumo Friend Tambunan and Evi Kristin Wulandari
    Citation: BMC Bioinformatics 2010 11(Suppl 7):S16

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