Volume 11 Supplement 8

Proceedings of the Neural Information Processing Systems (NIPS) Workshop on Machine Learning in Computational Biology (MLCB)


Edited by Yanjun Qi and Gal Chechik

Machine Learning in Computational Biology (MLCB) 2009.

Whistler, Canada

10-11 December 2009

  1. Research

    Efficient motif finding algorithms for large-alphabet inputs

    We consider the problem of identifying motifs, recurring or conserved patterns, in the biological sequence data sets. To solve this task, we present a new deterministic algorithm for finding patterns that are ...

    Pavel P Kuksa and Vladimir Pavlovic

    BMC Bioinformatics 2010 11(Suppl 8):S1

    Published on: 26 October 2010

  2. Research

    Graphical models for inferring single molecule dynamics

    The recent explosion of experimental techniques in single molecule biophysics has generated a variety of novel time series data requiring equally novel computational tools for analysis and inference. This arti...

    Jonathan E Bronson, Jake M Hofman, Jingyi Fei, Ruben L Gonzalez Jr. and Chris H Wiggins

    BMC Bioinformatics 2010 11(Suppl 8):S2

    Published on: 26 October 2010

  3. Research

    Exploiting physico-chemical properties in string kernels

    String kernels are commonly used for the classification of biological sequences, nucleotide as well as amino acid sequences. Although string kernels are already very powerful, when it comes to amino acids they...

    Nora C Toussaint, Christian Widmer, Oliver Kohlbacher and Gunnar Rätsch

    BMC Bioinformatics 2010 11(Suppl 8):S7

    Published on: 26 October 2010