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Volume 13 Supplement 3

ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2011


Edited by Sun Kim and Wei Wang

Publication of this supplement has been supported by NSF support number NSF IIS1137427: III: Small: Women in Bioinformatics Initiative at ACM-BCB 2011.

ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2011 (ACM-BCB).

Chicago, IL, USA1-3 August 2011

  1. The relationships between the gene functional similarity and gene expression profile, and between gene function annotation and gene sequence have been studied extensively. However, not much work has considered...

    Authors: Li An, Haibin Ling, Zoran Obradovic, Desmond J Smith and Vasileios Megalooikonomou
    Citation: BMC Bioinformatics 2012 13(Suppl 3):S1
  2. Metabolic network alignment is a system scale comparative analysis that discovers important similarities and differences across different metabolisms and organisms. Although the problem of aligning metabolic n...

    Authors: Ferhat Ay, Michael Dang and Tamer Kahveci
    Citation: BMC Bioinformatics 2012 13(Suppl 3):S2
  3. DNA shuffling generates combinatorial libraries of chimeric genes by stochastically recombining parent genes. The resulting libraries are subjected to large-scale genetic selection or screening to identify tho...

    Authors: Lu He, Alan M Friedman and Chris Bailey-Kellogg
    Citation: BMC Bioinformatics 2012 13(Suppl 3):S3
  4. Selecting an appropriate classifier for a particular biological application poses a difficult problem for researchers and practitioners alike. In particular, choosing a classifier depends heavily on the featur...

    Authors: R Mitchell Parry, John H Phan and May D Wang
    Citation: BMC Bioinformatics 2012 13(Suppl 3):S7
  5. The normal functioning of a living cell is characterized by complex interaction networks involving many different types of molecules. Associations detected between diseases and perturbations in well-defined pa...

    Authors: Corban G Rivera, Brett M Tyler and TM Murali
    Citation: BMC Bioinformatics 2012 13(Suppl 3):S9
  6. The availability of large-scale curated protein interaction datasets has given rise to the opportunity to investigate higher level organization and modularity within the protein interaction network (PPI) using gr...

    Authors: Boon-Siew Seah, Sourav S Bhowmick, C Forbes Dewey Jr and Hanry Yu
    Citation: BMC Bioinformatics 2012 13(Suppl 3):S10
  7. Advances in high-throughput technology has led to an increased amount of available data on protein-protein interaction (PPI) data. Detecting and extracting functional modules that are common across multiple ne...

    Authors: Yu-Keng Shih and Srinivasan Parthasarathy
    Citation: BMC Bioinformatics 2012 13(Suppl 3):S11
  8. Genome browsers are a common tool used by biologists to visualize genomic features including genes, polymorphisms, and many others. However, existing genome browsers and visualization tools are not well-suited...

    Authors: Jeremy R Wang, Fernando Pardo-Manuel de Villena and Leonard McMillan
    Citation: BMC Bioinformatics 2012 13(Suppl 3):S13
  9. DNA methylation is essential for normal development and differentiation and plays a crucial role in the development of nearly all types of cancer. Aberrant DNA methylation patterns, including genome-wide hypom...

    Authors: Youngik Yang, Kenneth Nephew and Sun Kim
    Citation: BMC Bioinformatics 2012 13(Suppl 3):S15

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