Skip to main content

Volume 13 Supplement 6

Proceedings of the Second Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-seq 2012)


Edited by Paul Medvedev and Eleazar Eskin

Second Annual RECOMB Satellite Workshop on Massively Parallel Sequencing. Go to conference site.

Barcelona, Spain19-20 April 2012

  1. The very large memory requirements for the construction of assembly graphs for de novo genome assembly limit current algorithms to super-computing environments.

    Authors: Chengxi Ye, Zhanshan Sam Ma, Charles H Cannon, Mihai Pop and Douglas W Yu
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S1
  2. High-throughput sequencing of whole genomes and transcriptomes allows one to generate large amounts of sequence data very rapidly and at a low cost. The goal of most mRNA sequencing studies is to perform the c...

    Authors: Ekaterina E Khrameeva and Mikhail S Gelfand
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S4
  3. In this paper, we address the problem of identifying and quantifying polymorphisms in RNA-seq data when no reference genome is available, without assembling the full transcripts. Based on the fundamental idea ...

    Authors: Gustavo AT Sacomoto, Janice Kielbassa, Rayan Chikhi, Raluca Uricaru, Pavlos Antoniou, Marie-France Sagot, Pierre Peterlongo and Vincent Lacroix
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S5
  4. Alu polymorphisms are some of the most common polymorphisms in the genome, yet few methods have been developed for their detection.

    Authors: Jón Ingi Sveinbjörnsson and Bjarni V Halldórsson
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S7
  5. Modern genetics has been transformed by high-throughput sequencing. New experimental designs in model organisms involve analyzing many individuals, pooled and sequenced in groups for increased efficiency. Howe...

    Authors: Matthew D Edwards and David K Gifford
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S8
  6. Sequencing of mRNA (RNA-seq) by next generation sequencing technologies is widely used for analyzing the transcriptomic state of a cell. Here, one of the main challenges is the mapping of a sequenced read to i...

    Authors: Thomas Bonfert, Gergely Csaba, Ralf Zimmer and Caroline C Friedel
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S9
  7. A cancer genome is derived from the germline genome through a series of somatic mutations. Somatic structural variants - including duplications, deletions, inversions, translocations, and other rearrangements ...

    Authors: Layla Oesper, Anna Ritz, Sarah J Aerni, Ryan Drebin and Benjamin J Raphael
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S10
  8. Transcript quantification is a long-standing problem in genomics and estimating the relative abundance of alternatively-spliced isoforms from the same transcript is an important special case. Both problems hav...

    Authors: Boyko Kakaradov, Hui Yuan Xiong, Leo J Lee, Nebojsa Jojic and Brendan J Frey
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S11

Annual Journal Metrics

  • 2022 Citation Impact
    3.0 - 2-year Impact Factor
    4.3 - 5-year Impact Factor
    0.938 - SNIP (Source Normalized Impact per Paper)
    1.100 - SJR (SCImago Journal Rank)

    2023 Speed
    19 days submission to first editorial decision for all manuscripts (Median)
    146 days submission to accept (Median)

    2023 Usage
    4,858 Altmetric mentions 

Sign up for article alerts and news from this journal