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Volume 13 Supplement 6

Proceedings of the Second Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-seq 2012)

Proceedings

Edited by Paul Medvedev and Eleazar Eskin

Second Annual RECOMB Satellite Workshop on Massively Parallel Sequencing. Go to conference site.

Barcelona, Spain19-20 April 2012

  1. The very large memory requirements for the construction of assembly graphs for de novo genome assembly limit current algorithms to super-computing environments.

    Authors: Chengxi Ye, Zhanshan Sam Ma, Charles H Cannon, Mihai Pop and Douglas W Yu
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S1
    Content type: Proceedings Published on:

  4. High-throughput sequencing of whole genomes and transcriptomes allows one to generate large amounts of sequence data very rapidly and at a low cost. The goal of most mRNA sequencing studies is to perform the c...

    Authors: Ekaterina E Khrameeva and Mikhail S Gelfand
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S4
    Content type: Proceedings Published on:

  5. In this paper, we address the problem of identifying and quantifying polymorphisms in RNA-seq data when no reference genome is available, without assembling the full transcripts. Based on the fundamental idea ...

    Authors: Gustavo AT Sacomoto, Janice Kielbassa, Rayan Chikhi, Raluca Uricaru, Pavlos Antoniou, Marie-France Sagot, Pierre Peterlongo and Vincent Lacroix
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S5
    Content type: Proceedings Published on:

  7. Alu polymorphisms are some of the most common polymorphisms in the genome, yet few methods have been developed for their detection.

    Authors: Jón Ingi Sveinbjörnsson and Bjarni V Halldórsson
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S7
    Content type: Proceedings Published on:

  8. Modern genetics has been transformed by high-throughput sequencing. New experimental designs in model organisms involve analyzing many individuals, pooled and sequenced in groups for increased efficiency. Howe...

    Authors: Matthew D Edwards and David K Gifford
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S8
    Content type: Proceedings Published on:

  9. Sequencing of mRNA (RNA-seq) by next generation sequencing technologies is widely used for analyzing the transcriptomic state of a cell. Here, one of the main challenges is the mapping of a sequenced read to i...

    Authors: Thomas Bonfert, Gergely Csaba, Ralf Zimmer and Caroline C Friedel
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S9
    Content type: Proceedings Published on:

  10. A cancer genome is derived from the germline genome through a series of somatic mutations. Somatic structural variants - including duplications, deletions, inversions, translocations, and other rearrangements ...

    Authors: Layla Oesper, Anna Ritz, Sarah J Aerni, Ryan Drebin and Benjamin J Raphael
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S10
    Content type: Proceedings Published on:

  11. Transcript quantification is a long-standing problem in genomics and estimating the relative abundance of alternatively-spliced isoforms from the same transcript is an important special case. Both problems hav...

    Authors: Boyko Kakaradov, Hui Yuan Xiong, Leo J Lee, Nebojsa Jojic and Brendan J Frey
    Citation: BMC Bioinformatics 2012 13(Suppl 6):S11
    Content type: Proceedings Published on:
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  • Citation Impact 2023
    Journal Impact Factor: 2.9
    5-year Journal Impact Factor: 3.6
    Source Normalized Impact per Paper (SNIP): 0.821
    SCImago Journal Rank (SJR): 1.005

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    Submission to first editorial decision (median days): 12
    Submission to acceptance (median days): 146

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BMC Bioinformatics

ISSN: 1471-2105

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