We present the two Bacteria Track tasks of BioNLP 2013 Shared Task (ST): Gene Regulation Network (GRN) and Bacteria Biotope (BB). These tasks were previously introduced in the 2011 BioNLP-ST Bacteria Track as Bac...
Volume 16 Supplement 10
BioNLP Shared Task 2013: Part 1
Edited by Claire Nédellec, Jin-Dong Kim, Sampo Pyysalo, Sophia Ananiadou and Pierre Zweigenbaum
Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. Articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.
BioNLP Shared Task 2013. Go to conference site.
Sofia, Bulgaria9 August 2013
Citation: BMC Bioinformatics 2015 16(Suppl 10):S1
Since their introduction in 2009, the BioNLP Shared Task events have been instrumental in advancing the development of methods and resources for the automatic extraction of information from the biomedical lite...Citation: BMC Bioinformatics 2015 16(Suppl 10):S2
Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task
The third edition of the BioNLP Shared Task was held with the grand theme "knowledge base construction (KB)". The Genia Event (GE) task was re-designed and implemented in light of this theme. For its final rep...Citation: BMC Bioinformatics 2015 16(Suppl 10):S3
The BioNLP Gene Regulation Task has attracted a diverse collection of submissions showcasing state-of-the-art systems. However, a principal challenge remains in obtaining a significant amount of recall. We arg...Citation: BMC Bioinformatics 2015 16(Suppl 10):S4
Information regarding bacteria biotopes is important for several research areas including health sciences, microbiology, and food processing and preservation. One of the challenges for scientists in these doma...Citation: BMC Bioinformatics 2015 16(Suppl 10):S5
The contribution of co-reference resolution to supervised relation detection between bacteria and biotopes entities
The acquisition of knowledge about relations between bacteria and their locations (habitats and geographical locations) in short texts about bacteria, as defined in the BioNLP-ST 2013 Bacteria Biotope task, de...Citation: BMC Bioinformatics 2015 16(Suppl 10):S6
Biomedical event extraction has been a major focus of biomedical natural language processing (BioNLP) research since the first BioNLP shared task was held in 2009. Accordingly, a large number of event extracti...Citation: BMC Bioinformatics 2015 16(Suppl 10):S7
Huge amounts of electronic biomedical documents, such as molecular biology reports or genomic papers are generated daily. Nowadays, these documents are mainly available in the form of unstructured free texts, ...Citation: BMC Bioinformatics 2015 16(Suppl 10):S8
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