Volume 7 Supplement 3

Second International Symposium on Semantic Mining in Biomedicine (SMBM)

Proceedings

Edited by Sophia Ananiadou, Juliane Fluck

Second International Symposium on Semantic Mining in Biomedicine (SMBM). Go to conference site.

Jena, Germany9-12 April 2006

Proceedings of the Second International Symposium for Semantic Mining in Biomedicine

Authors: Sophia Ananiadou and Juliane Fluck

Citation: BMC Bioinformatics 2006 7(Suppl 3):S1

Content type: Introduction Published on: 24 November 2006
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Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches

We study the adaptation of Link Grammar Parser to the biomedical sublanguage with a focus on domain terms not found in a general parser lexicon. Using two biomedical corpora, we implement and evaluate three ap...

Authors: Sampo Pyysalo, Tapio Salakoski, Sophie Aubin and Adeline Nazarenko

Citation: BMC Bioinformatics 2006 7(Suppl 3):S2

Content type: Proceedings Published on: 24 November 2006
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An environment for relation mining over richly annotated corpora: the case of GENIA

The biomedical domain is witnessing a rapid growth of the amount of published scientific results, which makes it increasingly difficult to filter the core information. There is a real need for support tools th...

Authors: Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess and Martin Romacker

Citation: BMC Bioinformatics 2006 7(Suppl 3):S3

Content type: Proceedings Published on: 24 November 2006
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Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts

Automatic recognition of relations between a specific disease term and its relevant genes or protein terms is an important practice of bioinformatics. Considering the utility of the results of this approach, w...

Authors: Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki and Jun'ichi Tsujii

Citation: BMC Bioinformatics 2006 7(Suppl 3):S4

Content type: Proceedings Published on: 24 November 2006
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A critical review of PASBio's argument structures for biomedical verbs

Propositional representations of biomedical knowledge are a critical component of most aspects of semantic mining in biomedicine. However, the proper set of propositions has yet to be determined. Recently, the...

Authors: K Bretonnel Cohen and Lawrence Hunter

Citation: BMC Bioinformatics 2006 7(Suppl 3):S5

Content type: Proceedings Published on: 24 November 2006
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Mapping data elements to terminological resources for integrating biomedical data sources

Data integration is a crucial task in the biomedical domain and integrating data sources is one approach to integrating data. Data elements (DEs) in particular play an important role in data integration. We co...

Authors: Fleur Mougin, Anita Burgun and Olivier Bodenreider

Citation: BMC Bioinformatics 2006 7(Suppl 3):S6

Content type: Proceedings Published on: 24 November 2006
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Second International Symposium on Semantic Mining in Biomedicine (SMBM)

Proceedings

Proceedings of the Second International Symposium for Semantic Mining in Biomedicine

Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches

An environment for relation mining over richly annotated corpora: the case of GENIA

Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts

A critical review of PASBio's argument structures for biomedical verbs

Mapping data elements to terminological resources for integrating biomedical data sources

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