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Volume 8 Supplement 4

The Second Automated Function Prediction Meeting

Proceedings

Edited by Ana PC Rodrigues, Barry J Grant, Adam Godzik and Iddo Friedberg

The Second Automated Function Prediction Meeting. Go to conference site.

La Jolla, CA, USA30 August - 1 September 2006

  1. Predicting a protein's structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing new representations for protein sequences, cal...

    Authors: Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, William Stafford Noble and Christina Leslie
    Citation: BMC Bioinformatics 2007 8(Suppl 4):S2
  2. Using a previously developed automated method for enzyme annotation, we report the re-annotation of the ENZYME database and the analysis of local error rates per class. In control experiments, we demonstrate t...

    Authors: Benjamin Audit, Emmanuel D Levy, Wally R Gilks, Leon Goldovsky and Christos A Ouzounis
    Citation: BMC Bioinformatics 2007 8(Suppl 4):S3
  3. Advances in structural biology, including structural genomics, have resulted in a rapid increase in the number of experimentally determined protein structures. However, about half of the structures deposited b...

    Authors: Marc A Marti-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P Davis, Ursula Pieper, Joaquín Dopazo and Andrej Sali
    Citation: BMC Bioinformatics 2007 8(Suppl 4):S4
  4. Existing methods for whole-genome comparisons require prior knowledge of related species and provide little automation in the function prediction process. Bacteriophage genomes are an example that cannot be ea...

    Authors: Jason Li, Saman K Halgamuge, Christopher I Kells and Sen-Lin Tang
    Citation: BMC Bioinformatics 2007 8(Suppl 4):S6
  5. An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will lead to improved methods for protein-ligand...

    Authors: Lei Xie and Philip E Bourne
    Citation: BMC Bioinformatics 2007 8(Suppl 4):S9
  6. Structural genomics initiatives are producing increasing numbers of three-dimensional (3D) structures for which there is little functional information. Structure-based annotation of molecular function is there...

    Authors: Sungroh Yoon, Jessica C Ebert, Eui-Young Chung, Giovanni De Micheli and Russ B Altman
    Citation: BMC Bioinformatics 2007 8(Suppl 4):S10

Annual Journal Metrics

  • Speed
    15 days to first decision for all manuscripts
    70 days to first decision for reviewed manuscripts only
    163 days from submission to acceptance
    36 days from acceptance to publication

    Citation Impact
    3.169 - 2-year Impact Factor
    3.629 - 5-year Impact Factor
    1.276 - Source Normalized Impact per Paper (SNIP)
    1.567 - SCImago Journal Rank (SJR)

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