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BMC Bioinformatics

Volume 8 Supplement 4

The Second Automated Function Prediction Meeting

Proceedings

Edited by Ana PC Rodrigues, Barry J Grant, Adam Godzik and Iddo Friedberg

The Second Automated Function Prediction Meeting. Go to conference site.

La Jolla, CA, USA30 August - 1 September 2006

  1. Content type: Proceedings

    Predicting a protein's structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing new representations for protein sequences, cal...

    Authors: Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, William Stafford Noble and Christina Leslie

    Citation: BMC Bioinformatics 2007 8(Suppl 4):S2

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  2. Content type: Proceedings

    Using a previously developed automated method for enzyme annotation, we report the re-annotation of the ENZYME database and the analysis of local error rates per class. In control experiments, we demonstrate t...

    Authors: Benjamin Audit, Emmanuel D Levy, Wally R Gilks, Leon Goldovsky and Christos A Ouzounis

    Citation: BMC Bioinformatics 2007 8(Suppl 4):S3

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  3. Content type: Proceedings

    Advances in structural biology, including structural genomics, have resulted in a rapid increase in the number of experimentally determined protein structures. However, about half of the structures deposited b...

    Authors: Marc A Marti-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P Davis, Ursula Pieper, Joaquín Dopazo and Andrej Sali

    Citation: BMC Bioinformatics 2007 8(Suppl 4):S4

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  4. Content type: Proceedings

    Existing methods for whole-genome comparisons require prior knowledge of related species and provide little automation in the function prediction process. Bacteriophage genomes are an example that cannot be ea...

    Authors: Jason Li, Saman K Halgamuge, Christopher I Kells and Sen-Lin Tang

    Citation: BMC Bioinformatics 2007 8(Suppl 4):S6

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  5. Content type: Proceedings

    An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will lead to improved methods for protein-ligand...

    Authors: Lei Xie and Philip E Bourne

    Citation: BMC Bioinformatics 2007 8(Suppl 4):S9

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  6. Content type: Proceedings

    Structural genomics initiatives are producing increasing numbers of three-dimensional (3D) structures for which there is little functional information. Structure-based annotation of molecular function is there...

    Authors: Sungroh Yoon, Jessica C Ebert, Eui-Young Chung, Giovanni De Micheli and Russ B Altman

    Citation: BMC Bioinformatics 2007 8(Suppl 4):S10

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