Volume 8 Supplement 5
Articles selected from posters presented at the Tenth Annual International Conference on Research in Computational Biology
Research
Edited by Alberto Apostolico, Raffaele Giancarlo, Concettina Guerra and Giuseppe Lancia
The Tenth Annual International Conference on Research in Computational Biology.
Venice, Italy2-5 April 2006
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Citation: BMC Bioinformatics 2007 8(Suppl 5):S1
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Bayesian approaches to reverse engineer cellular systems: a simulation study on nonlinear Gaussian networks
Reverse engineering cellular networks is currently one of the most challenging problems in systems biology. Dynamic Bayesian networks (DBNs) seem to be particularly suitable for inferring relationships between...
Citation: BMC Bioinformatics 2007 8(Suppl 5):S2 -
Learning biophysically-motivated parameters for alpha helix prediction
Our goal is to develop a state-of-the-art protein secondary structure predictor, with an intuitive and biophysically-motivated energy model. We treat structure prediction as an optimization problem, using para...
Citation: BMC Bioinformatics 2007 8(Suppl 5):S3 -
A stochastic differential equation model for transcriptional regulatory networks
This work explores the quantitative characteristics of the local transcriptional regulatory network based on the availability of time dependent gene expression data sets.
Citation: BMC Bioinformatics 2007 8(Suppl 5):S4 -
On consensus biomarker selection
Recent development of mass spectrometry technology enabled the analysis of complex peptide mixtures. A lot of effort is currently devoted to the identification of biomarkers in human body fluids like serum or ...
Citation: BMC Bioinformatics 2007 8(Suppl 5):S5 -
Refining intra-protein contact prediction by graph analysis
Accurate prediction of intra-protein residue contacts from sequence information will allow the prediction of protein structures. Basic predictions of such specific contacts can be further refined by jointly an...
Citation: BMC Bioinformatics 2007 8(Suppl 5):S6 -
Simultaneous identification of long similar substrings in large sets of sequences
Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in order to identify genes and their alterna...
Citation: BMC Bioinformatics 2007 8(Suppl 5):S7 -
Identification of hot regions in protein-protein interactions by sequential pattern mining
Identification of protein interacting sites is an important task in computational molecular biology. As more and more protein sequences are deposited without available structural information, it is strongly de...
Citation: BMC Bioinformatics 2007 8(Suppl 5):S8 -
Automatic extraction of reliable regions from multiple sequence alignments
High quality multiple alignments are crucial in the transfer of annotation from one genome to another. Multiple alignment methods strive to achieve ever increasing levels of average accuracy on benchmark sets ...
Citation: BMC Bioinformatics 2007 8(Suppl 5):S9
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