BMC Bioinformatics

Collections open to submissions

Microbial taxonomy

Guest edited by Xiaoquan Su and Yanni Sun

Bioinformatics in agriculture

Guest edited by Jacqui Batley, Ratna Prabha and Anil Rai

Computational methods in microscopy image analysis

Guest edited by Dariusz Plewczyński

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Editor's Picks

NeuronBridge: an intuitive web application for neuronal morphology search across large data sets

New Content Item © © faraktinov / stock.adobe.com Cell4D: a general purpose spatial stochastic simulator for cellular pathways

Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index

Authors: Guguchkin Egor, Kasianov Artem, Belenikin Maksim, Zobkova Gaukhar, Kosova Ekaterina, Makeev Vsevolod and Karpulevich Evgeny

Content type: Research 13 July 2024
METASEED: a novel approach to full-length 16S rRNA gene reconstruction from short read data

Authors: Melcy Philip, Knut Rudi, Ida Ormaasen, Inga Leena Angell, Ragnhild Pettersen, Nigel B. Keeley and Lars-Gustav Snipen

Content type: Research 12 July 2024
expHRD: an individualized, transcriptome-based prediction model for homologous recombination deficiency assessment in cancer

Authors: Jae Jun Lee, Hyun Ju Kang, Donghyo Kim, Si On Lim, Stephanie S. Kim, Gahyun Kim, Sanguk Kim, Jin-Ku Lee and Jinho Kim

Content type: Research 12 July 2024
SimSpliceEvol2: alternative splicing-aware simulation of biological sequence evolution and transcript phylogenies

Authors: Wend Yam D. D. Ouedraogo and Aida Ouangraoua

Content type: Software 11 July 2024
A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques

Authors: Louison Fresnais, Olivier Perin, Anne Riu, Romain Grall, Alban Ott, Bernard Fromenty, Jean-Clément Gallardo, Maximilian Stingl, Clément Frainay, Fabien Jourdan and Nathalie Poupin

Content type: Research 11 July 2024

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QMachine: commodity supercomputing in web browsers

Authors: Sean R Wilkinson and Jonas S Almeida

Content type: Research article 9 June 2014
WGCNA: an R package for weighted correlation network analysis

Authors: Peter Langfelder and Steve Horvath

Content type: Software 29 December 2008
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Authors: Bo Li and Colin N Dewey

Content type: Software 4 August 2011

The Related Article to this article has been published in Nature Protocols 2013 8:nprot.2013.084
Statistical analysis of real-time PCR data

Authors: Joshua S Yuan, Ann Reed, Feng Chen and C Neal Stewart Jr

Content type: Methodology article 22 February 2006
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

Authors: Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen and Thomas L Madden

Content type: Software 18 June 2012

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BMC Bioinformatics is an open access, peer-reviewed journal that considers articles describing novel computational algorithms and software, models and tools, including statistical methods, machine learning and artificial intelligence, as well as systems biology.

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BMC Bioinformatics

Collections open to submissions

Microbial taxonomy

Bioinformatics in agriculture

Computational methods in microscopy image analysis

Editor's Picks

Articles

Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index

METASEED: a novel approach to full-length 16S rRNA gene reconstruction from short read data

expHRD: an individualized, transcriptome-based prediction model for homologous recombination deficiency assessment in cancer

SimSpliceEvol2: alternative splicing-aware simulation of biological sequence evolution and transcript phylogenies

A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques

QMachine: commodity supercomputing in web browsers

WGCNA: an R package for weighted correlation network analysis

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Statistical analysis of real-time PCR data

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

Aims and scope

Become an Editorial Board Member

Featured blog

Spotlight On

Climate Change

BMC Series Blog

Introducing the BMC Series SDG Editorial Board Members: Taddese Zerfu

World Refugee Day 2024: Highlights from the BMC Series

Highlights of the BMC Series – May 2024

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