Isam F, Rooke R, Wong A, Hui C, Luu T, Bhardwaj P, Yang G: Miniature Inverted-Repeat Transposable Elements (MITEs): Discovery, Distribution and Activity. Genome. 2013, 10.1139/gen-2012-0174.
Google Scholar
Feschotte C, Zhang X, Wessler SR: Miniature Inverted-Repeat Transposable Elements (MITEs) and their relationship with established DNA transposons. Mobile DNA II. Edited by: Craig N, Craigie R, Gellert M, Lambowitz A. 2002, Washington DC: American Society of Microbiology Press, 1147-1158.
Chapter
Google Scholar
Jiang N, Feschotte C, Zhang XY, Wessler SR: Using rice to understand the origin and amplification of Miniature Inverted Repeat Transposable Elements (MITEs). Curr Opin Plant Biol. 2004, 7 (2): 115-119. 10.1016/j.pbi.2004.01.004.
Article
CAS
PubMed
Google Scholar
Yang G, Zhang F, Hancock CN, Wessler SR: Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis Thaliana. Proc Natl Acad Sci USA. 2007, 104 (26): 10962-10967. 10.1073/pnas.0702080104.
Article
PubMed Central
CAS
PubMed
Google Scholar
Yang GJ, Nagel DH, Feschotte C, Hancock CN, Wessler SR: Tuned for transposition: molecular determinants underlying the hyperactivity of a stowaway MITE. Science. 2009, 325 (5946): 1391-1394. 10.1126/science.1175688.
Article
CAS
PubMed
Google Scholar
Lu C, Chen JJ, Zhang Y, Hu Q, Su WQ, Kuang HH: Miniature Inverted-Repeat Transposable Elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa. Mol Biol Evol. 2012, 29 (3): 1005-1017. 10.1093/molbev/msr282.
Article
PubMed Central
CAS
PubMed
Google Scholar
Yaakov B, Ben-David S, Kashkush K: Genome-wide analysis of stowaway-like MITEs in wheat reveals high sequence conservation, gene association, and genomic diversification. Plant Physiol. 2013, 161 (1): 486-496. 10.1104/pp.112.204404.
Article
PubMed Central
CAS
PubMed
Google Scholar
Park KC, Lee JK, Kim NH, Shin YB, Lee JH, Kim NS: Genetic variation in Oryza species detected by MITE-AFLP. Genes Genet Syst. 2003, 78 (3): 235-243. 10.1266/ggs.78.235.
Article
CAS
PubMed
Google Scholar
Momose M, Abe Y, Ozeki Y: Miniature inverted-repeat transposable elements of stowaway are active in potato. Genetics. 2010, 186 (1): 59-U115. 10.1534/genetics.110.117606.
Article
PubMed Central
CAS
PubMed
Google Scholar
Jiang N, Bao ZR, Zhang XY, Hirochika H, Eddy SR, McCouch SR, Wessler SR: An active DNA transposon family in rice. Nature. 2003, 421 (6919): 163-167. 10.1038/nature01214.
Article
CAS
PubMed
Google Scholar
Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, Fuse T, Baba T, Yamamoto K, Umehara Y, Nagamura Y: Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the arabidopsis flowering time gene CONSTANS. Plant Cell. 2000, 12 (12): 2473-2483.
Article
PubMed Central
CAS
PubMed
Google Scholar
Yang GJ, Lee YH, Jiang YM, Shi XY, Kertbundit S, Hall TC: A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter. Plant Cell. 2005, 17 (5): 1559-1568. 10.1105/tpc.104.030528.
Article
PubMed Central
CAS
PubMed
Google Scholar
Yan YS, Zhang YM, Yang K, Sun ZX, Fu YP, Chen XY, Fang RX: Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice. Plant J. 2011, 65 (5): 820-828. 10.1111/j.1365-313X.2010.04467.x.
Article
CAS
PubMed
Google Scholar
Kuang HH, Padmanabhan C, Li F, Kamei A, Bhaskar PB, Shu OY, Jiang JM, Buell CR, Baker B: Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs. Genome Res. 2009, 19 (1): 42-56.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cantu D, Vanzetti LS, Sumner A, Dubcovsky M, Matvienko M, Distelfeld A, Michelmore RW, Dubcovsky J: Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics. 2010, 11: 408-10.1186/1471-2164-11-408.
Article
PubMed Central
PubMed
Google Scholar
Piriyapongsa J, Jordan IK: A Family of human MicroRNA genes from Miniature Inverted-Repeat Transposable Elements. PLoS One. 2007, 2 (2): e203-10.1371/journal.pone.0000203.
Article
PubMed Central
PubMed
Google Scholar
Naito K, Zhang F, Tsukiyama T, Saito H, Hancock CN, Richardson AO, Okumoto Y, Tanisaka T, Wessler SR: Unexpected consequences of a sudden and massive transposon amplification on rice gene expression. Nature. 2009, 461 (7267): 1130-U1232. 10.1038/nature08479.
Article
CAS
PubMed
Google Scholar
Fattash I, Bhardwaj P, Hui C, Yang G: A rice stowaway MITE for gene transfer in yeast. PLoS One. 2013, In press
Google Scholar
Yang G, Weil CF, Wessler SR: A rice Tc1/mariner-like element transposes in yeast. Plant Cell. 2006, 18 (10): 2469-2478. 10.1105/tpc.106.045906.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wang S, Zhang LL, Meyer E, Bao ZM: Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome. Biol Direct. 2010, 5: 520-10.1186/1471-2164-11-520.
Article
Google Scholar
Feschotte C, Swamy L, Wessler SR: Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs). Genetics. 2003, 163 (2): 747-758.
PubMed Central
CAS
PubMed
Google Scholar
Han MJ, Shen YH, Gao YH, Chen LY, Xiang ZH, Zhang Z: Burst expansion, distribution and diversification of MITEs in the silkworm genome. BMC Genomics. 2010, 11: 520-10.1186/1471-2164-11-520.
Article
PubMed Central
PubMed
Google Scholar
Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M: Genome sequence of Aedes aegypti, a major arbovirus vector. Science. 2007, 316 (5832): 1718-1723. 10.1126/science.1138878.
Article
CAS
PubMed
Google Scholar
Bureau TE, Wessler SR: Tourist: a large family of small inverted repeat elements frequently associated with maize genes. Plant Cell. 1992, 4 (10): 1283-1294.
Article
PubMed Central
CAS
PubMed
Google Scholar
Bureau TE, Wessler SR: Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell. 1994, 6 (6): 907-916.
Article
PubMed Central
CAS
PubMed
Google Scholar
Bergman CM, Quesneville H: Discovering and detecting transposable elements in genome sequences. Brief Bioinform. 2007, 8 (6): 382-392. 10.1093/bib/bbm048.
Article
CAS
PubMed
Google Scholar
Lerat E: Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs. Heredity. 2010, 104 (6): 520-533. 10.1038/hdy.2009.165.
Article
CAS
PubMed
Google Scholar
Tu ZJ: Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambiae. Proc Natl Acad Sci USA. 2001, 98 (4): 1699-1704. 10.1073/pnas.98.4.1699.
Article
PubMed Central
CAS
PubMed
Google Scholar
Chen Y, Zhou F, Li G, Xu Y: MUST: a system for identification of miniature inverted-repeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi. Gene. 2009, 436 (1-2): 1-7.
Article
CAS
PubMed
Google Scholar
Han Y, Wessler SR: MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences. Nucleic Acids Res. 2010, 38 (22): e199-10.1093/nar/gkq862.
Article
PubMed Central
PubMed
Google Scholar
Rooke R, Yang GJ: TE Displayer for post-genomic analysis of transposable elements. Bioinformatics. 2011, 27 (2): 286-287. 10.1093/bioinformatics/btq639.
Article
CAS
PubMed
Google Scholar
Tempel S, Jurka M, Jurka J: VisualRepbase: an interface for the study of occurrences of transposable element families. BMC Bioinformatics. 2008, 9: 345-10.1186/1471-2105-9-345.
Article
PubMed Central
PubMed
Google Scholar
Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T: The rice annotation project database (RAP-DB): 2008 update. Nucleic Acids Res. 2008, 36: D1028-D1033.
CAS
PubMed
Google Scholar
Yang GJ, Hall TC: MAK, a computational tool kit for automated MITE analysis. Nucleic Acids Res. 2003, 31 (13): 3659-3665. 10.1093/nar/gkg531.
Article
PubMed Central
CAS
PubMed
Google Scholar
Janicki M, Rooke R, Yang GJ: Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes. Chromosome Res. 2011, 19 (6): 787-808. 10.1007/s10577-011-9230-7.
Article
CAS
PubMed
Google Scholar
Yang GJ, Wong A, Rooke R: ATon, abundant novel nonautonomous mobile genetic elements in yellow fever mosquito (Aedes aegypti). BMC Genomics. 2012, 13: 283-10.1186/1471-2164-13-283.
Article
PubMed Central
CAS
PubMed
Google Scholar
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JG, Korf I, Lapp H: The Bioperl toolkit: perl modules for the life sciences. Genome Res. 2002, 12 (10): 1611-1618. 10.1101/gr.361602.
Article
PubMed Central
CAS
PubMed
Google Scholar