Arends D, Prins P, Jansen RC, Broman KW: R/qtl: high-throughput multiple QTL mapping. Bioinformatics. 2010, 26 (23): 2990-2992. 10.1093/bioinformatics/btq565.
Article
CAS
PubMed Central
PubMed
Google Scholar
Durrant C, Swertz MA, Alberts R, Arends D, Moller S, Mott R, Prins P, van der Velde KJ, Jansen RC, Schughart K: Bioinformatics tools and database resources for systems genetics analysis in mice--a short review and an evaluation of future needs. Brief Bioinform. 2012, 13 (2): 135-142. 10.1093/bib/bbr026.
Article
PubMed Central
PubMed
Google Scholar
Arends D, van der Velde KJ, Prins P, Broman KW, Moller S, Jansen RC, Swertz MA: xQTL workbench: a scalable web environment for multi-level QTL analysis. Bioinformatics. 2012, 28 (7): 1042-1044. 10.1093/bioinformatics/bts049.
Article
CAS
PubMed Central
PubMed
Google Scholar
Zych K, Li Y, van der Velde JK, Joosen RV, Ligterink W, Jansen RC, Arends D: Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains. BMC Bioinformatics. 2015, 16: 51-
Article
PubMed Central
PubMed
Google Scholar
Homayouni R, Byrne JH, Eskin A: Dynamics of protein phosphorylation in sensory neurons of Aplysia. J Neurosci. 1995, 15 (1 Pt 1): 429-438.
CAS
PubMed
Google Scholar
Homayouni R, Nunez-Regueiro M, Byrne JH, Eskin A: Identification of two phosphoproteins affected by serotonin in Aplysia sensory neurons. Brain Res. 1997, 750 (1-2): 87-94. 10.1016/S0006-8993(96)01335-2.
Article
CAS
PubMed
Google Scholar
Homayouni R, Rice DS, Sheldon M, Curran T: Disabled-1 binds to the cytoplasmic domain of amyloid precursor-like protein 1. J Neurosci. 1999, 19 (17): 7507-7515.
CAS
PubMed
Google Scholar
Heinrich KE, Berry MW, Homayouni R: Gene tree labeling using nonnegative matrix factorization on biomedical literature. Comput Intell Neurosci. 2008, 276535-
Google Scholar
Homayouni R, Heinrich K, Wei L, Berry MW: Gene clustering by latent semantic indexing of MEDLINE abstracts. Bioinformatics. 2005, 21 (1): 104-115. 10.1093/bioinformatics/bth464.
Article
CAS
PubMed
Google Scholar
Roy S, Heinrich K, Phan V, Berry MW, Homayouni R: Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets. BMC Bioinformatics. 2011, 12 (Suppl 10): S19-10.1186/1471-2105-12-S10-S19.
Article
PubMed Central
PubMed
Google Scholar
Tjioe E, Berry MW, Homayouni R: Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization). BMC Bioinformatics. 2010, 11 (Suppl 6): S14-10.1186/1471-2105-11-S6-S14.
Article
PubMed Central
PubMed
Google Scholar
Xu L, Furlotte N, Lin Y, Heinrich K, Berry MW, George EO, Homayouni R: Functional cohesion of gene sets determined by latent semantic indexing of PubMed abstracts. PLoS One. 2011, 6 (4): e18851-10.1371/journal.pone.0018851.
Article
CAS
PubMed Central
PubMed
Google Scholar
Jernigan TL, Brown TT, Hagler DJ, Akshoomoff N, Bartsch H, Newman E, Thompson WK, Bloss CS, Murray SS, Schork N, et al: The Pediatric Imaging, Neurocognition, and Genetics (PING) Data Repository. Neuroimage. 2015
Google Scholar
Desikan RS, Segonne F, Fischl B, Quinn BT, Dickerson BC, Blacker D, Buckner RL, Dale AM, Maguire RP, Hyman BT, et al: An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage. 2006, 31 (3): 968-980. 10.1016/j.neuroimage.2006.01.021.
Article
PubMed
Google Scholar
Chen CH, Gutierrez ED, Thompson W, Panizzon MS, Jernigan TL, Eyler LT, Fennema-Notestine C, Jak AJ, Neale MC, Franz CE, et al: Hierarchical genetic organization of human cortical surface area. Science. 2012, 335 (6076): 1634-1636. 10.1126/science.1215330.
Article
CAS
PubMed Central
PubMed
Google Scholar
Bartsch H, Thompson WK, Jernigan TL, Dale AM: A web-portal for interactive data exploration, visualization, and hypothesis testing. Front Neuroinform. 2014, 8: 25-
Article
PubMed Central
PubMed
Google Scholar
Karagiannis TC: The timeless influence of Hippocratic ideals on diet, salicytates and personalized medicine. Hell J Nucl Med. 2014, 17 (1): 2-6.
PubMed
Google Scholar
Collins FS, Varmus H: A new initiative on precision medicine. N Engl J Med. 2015, 372 (9): 793-795. 10.1056/NEJMp1500523.
Article
CAS
PubMed
Google Scholar
McGregor TL, Van Driest SL, Brothers KB, Bowton EA, Muglia LJ, Roden DM: Inclusion of pediatric samples in an opt-out biorepository linking DNA to de-identified medical records: pediatric BioVU. Clin Pharmacol Ther. 2013, 93 (2): 204-211. 10.1038/clpt.2012.230.
Article
CAS
PubMed Central
PubMed
Google Scholar
Pendergrass S, Dudek SM, Roden DM, Crawford DC, Ritchie MD: Visual integration of results from a large DNA biobank (BioVU) using synthesis-view. Pac Symp Biocomput. 2011, 265-275.
Google Scholar
Carroll RJ, Bastarache L, Denny JC: R PheWAS: data analysis and plotting tools for phenome-wide association studies in the R environment. Bioinformatics. 2014, 30 (16): 2375-2376. 10.1093/bioinformatics/btu197.
Article
CAS
PubMed Central
PubMed
Google Scholar
Denny JC, Bastarache L, Ritchie MD, Carroll RJ, Zink R, Mosley JD, Field JR, Pulley JM, Ramirez AH, Bowton E, et al: Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Nat Biotechnol. 2013, 31 (12): 1102-1110. 10.1038/nbt.2749.
Article
CAS
PubMed Central
PubMed
Google Scholar
Denny JC, Ritchie MD, Basford MA, Pulley JM, Bastarache L, Brown-Gentry K, Wang D, Masys DR, Roden DM, Crawford DC: PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations. Bioinformatics. 2010, 26 (9): 1205-1210. 10.1093/bioinformatics/btq126.
Article
CAS
PubMed Central
PubMed
Google Scholar
McCarty CA, Chisholm RL, Chute CG, Kullo IJ, Jarvik GP, Larson EB, Li R, Masys DR, Ritchie MD, Roden DM, et al: The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies. BMC Med Genomics. 2011, 4: 13-10.1186/1755-8794-4-13.
Article
PubMed Central
PubMed
Google Scholar
Kumar S, Nilsen WJ, Abernethy A, Atienza A, Patrick K, Pavel M, Riley WT, Shar A, Spring B, Spruijt-Metz D, et al: Mobile health technology evaluation: the mHealth evidence workshop. Am J Prev Med. 2013, 45 (2): 228-236. 10.1016/j.amepre.2013.03.017.
Article
PubMed Central
PubMed
Google Scholar
Nilsen W, Kumar S, Shar A, Varoquiers C, Wiley T, Riley WT, Pavel M, Atienza AA: Advancing the science of mHealth. J Health Commun. 2012, 17 (Suppl 1): 5-10.
Article
PubMed
Google Scholar
Bergsma R, Kanis E, Knol EF, Bijma P: The contribution of social effects to heritable variation in finishing traits of domestic pigs (Sus scrofa). Genetics. 2008, 178 (3): 1559-1570. 10.1534/genetics.107.084236.
Article
CAS
PubMed Central
PubMed
Google Scholar
Bouwman AC, Bergsma R, Duijvesteijn N, Bijma P: Maternal and social genetic effects on average daily gain of piglets from birth until weaning. J Anim Sci. 2010, 88 (9): 2883-2892. 10.2527/jas.2009-2494.
Article
CAS
PubMed
Google Scholar
Camerlink I, Turner SP, Bijma P, Bolhuis JE: Indirect genetic effects and housing conditions in relation to aggressive behaviour in pigs. PLoS One. 2013, 8 (6): e65136-10.1371/journal.pone.0065136.
Article
CAS
PubMed Central
PubMed
Google Scholar
Camerlink I, Ursinus WW, Bijma P, Kemp B, Bolhuis JE: Indirect genetic effects for growth rate in domestic pigs alter aggressive and manipulative biting behaviour. Behav Genet. 2015, 45 (1): 117-126. 10.1007/s10519-014-9671-9.
Article
PubMed Central
PubMed
Google Scholar
Schroeder JW, Conneely KN, Cubells JC, Kilaru V, Newport DJ, Knight BT, Stowe ZN, Brennan PA, Krushkal J, Tylavsky FA, et al: Neonatal DNA methylation patterns associate with gestational age. Epigenetics. 2011, 6 (12): 1498-1504. 10.4161/epi.6.12.18296.
Article
CAS
PubMed Central
PubMed
Google Scholar
Alisch RS, Barwick BG, Chopra P, Myrick LK, Satten GA, Conneely KN, Warren ST: Age-associated DNA methylation in pediatric populations. Genome Res. 2012, 22 (4): 623-632. 10.1101/gr.125187.111.
Article
CAS
PubMed Central
PubMed
Google Scholar
Barfield RT, Almli LM, Kilaru V, Smith AK, Mercer KB, Duncan R, Klengel T, Mehta D, Binder EB, Epstein MP, et al: Accounting for population stratification in DNA methylation studies. Genet Epidemiol. 2014, 38 (3): 231-241. 10.1002/gepi.21789.
Article
PubMed Central
PubMed
Google Scholar
Klengel T, Mehta D, Anacker C, Rex-Haffner M, Pruessner JC, Pariante CM, Pace TW, Mercer KB, Mayberg HS, Bradley B, et al: Allele-specific FKBP5 DNA demethylation mediates gene-childhood trauma interactions. Nat Neurosci. 2013, 16 (1): 33-41.
Article
CAS
PubMed Central
PubMed
Google Scholar
Smith AK, Kilaru V, Klengel T, Mercer KB, Bradley B, Conneely KN, Ressler KJ, Binder EB: DNA extracted from saliva for methylation studies of psychiatric traits: evidence tissue specificity and relatedness to brain. Am J Med Genet B Neuropsychiatr Genet. 2015, 168B (1): 36-44.
Article
CAS
PubMed
Google Scholar
Smith AK, Kilaru V, Kocak M, Almli LM, Mercer KB, Ressler KJ, Tylavsky FA, Conneely KN: Methylation quantitative trait loci (meQTLs) are consistently detected across ancestry, developmental stage, and tissue type. BMC Genomics. 2014, 15: 145-10.1186/1471-2164-15-145.
Article
PubMed Central
CAS
PubMed
Google Scholar
Jiang R, Jones MJ, Chen E, Neumann SM, Fraser HB, Miller GE, Kobor MS: Discordance of DNA methylation variance between two accessible human tissues. Sci Rep. 2015, 5: 8257-
Article
PubMed Central
CAS
PubMed
Google Scholar
Lam LL, Emberly E, Fraser HB, Neumann SM, Chen E, Miller GE, Kobor MS: Factors underlying variable DNA methylation in a human community cohort. Proc Natl Acad Sci U S A. 2012, 109 (Suppl 2): 17253-17260.
Article
CAS
PubMed Central
PubMed
Google Scholar
Essex MJ, Boyce WT, Hertzman C, Lam LL, Armstrong JM, Neumann SM, Kobor MS: Epigenetic vestiges of early developmental adversity: childhood stress exposure and DNA methylation in adolescence. Child Dev. 2013, 84 (1): 58-75. 10.1111/j.1467-8624.2011.01641.x.
Article
PubMed Central
PubMed
Google Scholar
Miller GE, Chen E, Fok AK, Walker H, Lim A, Nicholls EF, Cole S, Kobor MS: Low early-life social class leaves a biological residue manifested by decreased glucocorticoid and increased proinflammatory signaling. Proc Natl Acad Sci U S A. 2009, 106 (34): 14716-14721. 10.1073/pnas.0902971106.
Article
CAS
PubMed Central
PubMed
Google Scholar
Chen E, Miller GE, Kobor MS, Cole SW: Maternal warmth buffers the effects of low early-life socioeconomic status on pro-inflammatory signaling in adulthood. Mol Psychiatry. 2011, 16 (7): 729-737. 10.1038/mp.2010.53.
Article
CAS
PubMed Central
PubMed
Google Scholar