Volume 16 Supplement 15

Proceedings of the 14th Annual UT-KBRIN Bioinformatics Summit 2015

Meeting abstracts

Edited by Eric Rouchka, Julia Chariker and Benjamin Harrison

Publication charges for this supplement were funded by the National Institutes of Health. The Supplement Editors declare that they have no competing interests.

14th Annual UT-KBRIN Bioinformatics Summit 2015. Go to conference site.

Buchanan, TN, USA20-22 March 2015

Concatenated PDF 16S15

Proceedings of the Fourteenth Annual UT- KBRIN Bioinformatics Summit 2015

Authors: Eric C Rouchka, Julia H Chariker and Benjamin J Harrison

Citation: BMC Bioinformatics 2015 16(Suppl 15):I1

Content type: Meeting report Published on: 23 October 2015
- View Full Text
- View PDF
Synaptic plasticity in infralimbic cortex mediates socially-acquired nicotine self-administration

Authors: Hao Chen, Tengfei Wang and Wenyan Han

Citation: BMC Bioinformatics 2015 16(Suppl 15):P1

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
An iterative workflow for creating biomedical visualizations using Inkscape and D3.js

Authors: William A Mattingly, Robert R Kelley, Julia H Chariker, Tim Weimken and Julio Ramirez

Citation: BMC Bioinformatics 2015 16(Suppl 15):P10

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Multi-scale study of normal aging predicts novel late-onset Alzheimer's disease risk variants

Authors: Sarah M Neuner, Lynda Wilmott, Matthew DeBoth, Thomas Shapaker, Jesse Ingels, Lu Lu, Rob Williams, Gerd Kempermann, Matthew Huentelman and Catherine C Kaczorowski

Citation: BMC Bioinformatics 2015 16(Suppl 15):P11

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Dunn Index Bootstrap (DIBS): A procedure to empirically select a cluster analysis method that identifies biologically and clinically relevant molecular disease subgroups

Authors: Iwona Pawlikowska, Zhifa Liu, Lei Shi, Tong Lin, Tanja Gruber, Giles Robinson, Arzu Onar-Thomas and Stan Pounds

Citation: BMC Bioinformatics 2015 16(Suppl 15):P12

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Validation and quality assurance for genome browser database exports

Authors: Roger Chui, Jerzy W Jaromczyk, Neil Moore and Christopher L Schardl

Citation: BMC Bioinformatics 2015 16(Suppl 15):P13

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Transcriptome analysis of breast cancer in African American women

Authors: Shruti S Sakhare, Jamaine Davis, Sammed N Mandape and Siddharth Pratap

Citation: BMC Bioinformatics 2015 16(Suppl 15):P14

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Analysis of sleep traits in knockout mice from the large-scale KOMP2 population using a non-invasive, high-throughput piezoelectric system

Authors: Mansi Sethi, Shreyas S Joshi, Martin Striz, Neil Cole, Jennifer Ryan, Michael E Lhamon, Anuj Agarwal, Stacey J Sukoff Rizzo, James M Denegre, Robert E Braun, David W Fardo, Kevin D Donohue, Elissa J Chesler, Karen L Svenson and Bruce F O'Hara

Citation: BMC Bioinformatics 2015 16(Suppl 15):P15

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Metabolomics data analysis and missing value issues with application to infarcted mouse hearts

Authors: Jasmit S Shah, Guy N Brock and Shesh N Rai

Citation: BMC Bioinformatics 2015 16(Suppl 15):P16

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
A linear model for predicting performance of short-read aligners using genome complexity

Authors: Quang Tran, Shanshan Gao, Nam S Vo and Vinhthuy Phan

Citation: BMC Bioinformatics 2015 16(Suppl 15):P17

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Improving variant calling by incorporating known genetic variants into read alignment

Authors: Nam S Vo and Vinhthuy Phan

Citation: BMC Bioinformatics 2015 16(Suppl 15):P18

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Population structure analysis on 2504 individuals across 26 ancestries using bioinformatics approaches

Authors: Jing Wang, David C Samuels, Yu Shyr and Yan Guo

Citation: BMC Bioinformatics 2015 16(Suppl 15):P19

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Convex-hull voting method on a large data set

Authors: Sally R Ellingson, Chi Wang and Radhakrishnan Nagarajan

Citation: BMC Bioinformatics 2015 16(Suppl 15):P2

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
An automated resource for enhanced differential analysis

Authors: Kai Wang, Charles A Phillips, Arnold M Saxton and Michael A Langston

Citation: BMC Bioinformatics 2015 16(Suppl 15):P20

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
SGDriver: a novel structural genomics-based approach to prioritize cancer related and potentially druggable somatic mutations

Authors: Junfei Zhao, Feixiong Cheng and Zhongming Zhao

Citation: BMC Bioinformatics 2015 16(Suppl 15):P21

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Using large public data repositories to discover novel genetic mutations with prospective links to melanoma

Authors: Tamas S Gal, Sally R Ellingson, Chi Wang, Jinpeng Liu, Stuart G Jarrett and John A D'Orazio

Citation: BMC Bioinformatics 2015 16(Suppl 15):P3

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Alignment-free methods for metagenomic profiling

Authors: Shanshan Gao, Diem-Trang Pham and Vinhthuy Phan

Citation: BMC Bioinformatics 2015 16(Suppl 15):P4

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Efficient identification of mutations that potentially confer treatment resistance through computational derivation

Authors: Christy M Gearheart, James R Lambert and Christopher C Porter

Citation: BMC Bioinformatics 2015 16(Suppl 15):P5

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Practicality of identifying mitochondria variants from exome and RNAseq data

Authors: Pan Zhang, David C Samuels, Brian Lehmann, Thomas Stricker, Jennifer Pietenpol, Yu Shyr and Yan Guo

Citation: BMC Bioinformatics 2015 16(Suppl 15):P6

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Which methods to choose to correct cell types in genome-scale blood-derived DNA methylation data?

Authors: Akhilesh Kaushal, Hongmei Zhang, Wilfried JJ Karmaus and Julie SL Wang

Citation: BMC Bioinformatics 2015 16(Suppl 15):P7

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Time course transcriptome data analysis for in vitro modeling of dilated cardiomyopathy using patient-derived induced pluripotent stem cells

Authors: Xing Li, Saranya Wyles, Sybil C Hrstka, Jean-Pierre A Kocher, Andre Terzic, Timothy M Olson and Timothy J Nelson

Citation: BMC Bioinformatics 2015 16(Suppl 15):P8

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF
Development of a literature informed Bayesian machine learning method for feature extraction and classification

Authors: Behrouz Madahian, Lih Yuan Deng and Ramin Homayouni

Citation: BMC Bioinformatics 2015 16(Suppl 15):P9

Content type: Poster presentation Published on: 23 October 2015
- View Full Text
- View PDF

Proceedings of the 14th Annual UT-KBRIN Bioinformatics Summit 2015

Meeting abstracts

Proceedings of the Fourteenth Annual UT- KBRIN Bioinformatics Summit 2015

Synaptic plasticity in infralimbic cortex mediates socially-acquired nicotine self-administration

An iterative workflow for creating biomedical visualizations using Inkscape and D3.js

Multi-scale study of normal aging predicts novel late-onset Alzheimer's disease risk variants

Dunn Index Bootstrap (DIBS): A procedure to empirically select a cluster analysis method that identifies biologically and clinically relevant molecular disease subgroups

Validation and quality assurance for genome browser database exports

Transcriptome analysis of breast cancer in African American women

Analysis of sleep traits in knockout mice from the large-scale KOMP2 population using a non-invasive, high-throughput piezoelectric system

Metabolomics data analysis and missing value issues with application to infarcted mouse hearts

A linear model for predicting performance of short-read aligners using genome complexity

Improving variant calling by incorporating known genetic variants into read alignment

Population structure analysis on 2504 individuals across 26 ancestries using bioinformatics approaches

Convex-hull voting method on a large data set

An automated resource for enhanced differential analysis

SGDriver: a novel structural genomics-based approach to prioritize cancer related and potentially druggable somatic mutations

Using large public data repositories to discover novel genetic mutations with prospective links to melanoma

Alignment-free methods for metagenomic profiling

Efficient identification of mutations that potentially confer treatment resistance through computational derivation

Practicality of identifying mitochondria variants from exome and RNAseq data

Which methods to choose to correct cell types in genome-scale blood-derived DNA methylation data?

Time course transcriptome data analysis for in vitro modeling of dilated cardiomyopathy using patient-derived induced pluripotent stem cells

Development of a literature informed Bayesian machine learning method for feature extraction and classification

Important information

Annual Journal Metrics

Follow

BMC Bioinformatics

Contact us