Malapelle U, Pisapia P, Rocco D, Smeraglio R, Spirito MD, Bellevicine C, et al.Next generation sequencing techniques in liquid biopsy: focus on non-small cell lung cancer patients. Transl Lung Cancer Res. 2016; 5:505–10.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hirsch FR, Scagliotti GV, Mulshine JL, Kwon R, Curran Jr WJ, Wu YL, et al.Lung cancer: current therapies and new targeted treatments. Lancet. 2016; 389(10066):299–311.
Article
PubMed
Google Scholar
Ferlay J, Soerjomataram I, Dikshit R, Eser S, Mathers C, Rebelo M, et al.Cancer incidence and mortality worldwide: Sources, methods and major patterns in GLOBOCAN 2012. Int J Cancer. 2015; 136(5):E359—86.
Article
PubMed
Google Scholar
Emery JD, Mitchell PL. Lung cancer in Asian women and health system implications for Australia. Lancet Oncol. 2017; 18(12):1570–1.
Article
PubMed
Google Scholar
Yaqub F. Intratumour heterogeneity in lung cancer. Lancet Oncol. 2014; 15(12):e536.
Article
PubMed
Google Scholar
Li Y, Sheu CC, Ye Y, de Andrade M, Wang L, Chang SC, et al.Genetic variants and risk of lung cancer in never smokers: a genome-wide association study. Lancet Oncol. 2010; 11(4):321–30.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hong CH, Chen YC, Chen WC, Tu KC, Tsai MH, Chan YH, et al.Construction of diagnosis system and gene regulatory networks based on microarray analysis. J Biomed Inform. 2018; 81:61.
Article
PubMed
Google Scholar
Hira ZM, Gillies DF. A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data. Adv Bioinforma. 2015; 2015:1–13.
Article
Google Scholar
Jiang N, Meng X, Mi H, Chi Y, Li S, Jin Z, et al.Circulating lncRNA XLOC_009167 serves as a diagnostic biomarker to predict lung cancer. Clin Chimica Acta. 2018; 486:26–33.
Article
CAS
Google Scholar
Cancer Genome Atlas Research Network, Weinstein JN, Collisson EA, Mills GB, Shaw KM, Ozenberger BA, Ellrott E, et al.The cancer genome atlas pan-cancer analysis project. Nat Genet. 2013; 45(10):1113–20.
Article
PubMed Central
Google Scholar
Anand R, Sarmah DT, Chatterjee S. Extracting proteins involved in disease progression using temporally connected network. Bmc Syst Biol. 2018; 12(1):78.
Article
PubMed
PubMed Central
Google Scholar
Anand R, Chatterjee S. Tracking disease progression by searching paths in a temporal network of biological processes. PloS ONE. 2017; 12(4):e0176172.
Article
PubMed
PubMed Central
Google Scholar
Zachariou M, Minadakis G, Oulas A, Afxenti S, Spyrou GM. Integrating multi-source information on a single network to detect disease-related clusters of molecular mechanisms. J Proteome. 2018; 188:15–29.
Article
CAS
Google Scholar
Piao J, Sun J, Yang Y, Jin T, Chen L, Lin Z. Target gene screening and evaluation of prognostic values in non-small cell lung cancers by bioinformatics analysis. Gene. 2018; 647:306–11.
Article
CAS
PubMed
Google Scholar
Cantini L, Medico E, Fortunato S, Caselle M. Detection of gene communities in multi-networks reveals cancer drivers. Sci Rep. 2015; 5:17386.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hung MS, Chen IC, Lung JH, Lin PY, Li YC, Tsai YH. Epidermal growth factor receptor mutation enhances expression of cadherin-5 in lung cancer cells. PLoS ONE. 2016; 11(6):e0158395.
Article
PubMed
PubMed Central
Google Scholar
Krishna R, Guo S. A Partial Granger Causality Approach to Explore Causal Networks Derived From Multi-parameter Data. Springer-Verlag. 2008; 5307:9–27.
CAS
Google Scholar
Liao W, Ding J, Marinazzo D, Xu Q, Wang Z, Yuan C, et al.Small-world directed networks in the human brain: multivariate Granger causality analysis of resting-state fMRI. Neuroimage. 2011; 54(4):2683–94.
Article
PubMed
Google Scholar
Cava C, Bertoli G, Colaprico A, Olsen C, Bontempi G, Castiglioni I. Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis. BMC Genomics. 2018; 19(1):25.
Article
PubMed
PubMed Central
Google Scholar
Liu R, Cheng Y, Yu J, Lv QL, Zhou HH. Identification and validation of gene module associated with lung cancer through coexpression network analysis. Gene. 2015; 563(1):56–62.
Article
CAS
PubMed
Google Scholar
Dai X, Li Y, Bai Z, Tang XQ. Molecular portraits revealing the heterogeneity of breast tumor subtypes defined using immunohistochemistry markers. Sci Rep. 2015; 5(4):14499.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li Y, Tang XQ, Bai Z, Dai X. Exploring the intrinsic differences among breast tumor subtypes defined using immunohistochemistry markers based on the decision tree. Sci Rep. 2016; 6:35773.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sun M, Ding T, Tang XQ, Yu K. An efficient mixed-model for screening differentially expressed genes of breast cancer based on LR-RF. IEEE/ACM Trans Comput Biol Bioinforma. 2018; PP(99):1–1.
Google Scholar
Landi MT, Dracheva T, Rotunno M, Figueroa JD, Liu H, Dasgupta A, et al.Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival. PLoS ONE. 2008; 3(2):e1651.
Article
PubMed
PubMed Central
Google Scholar
Bossé Y, Sazonova O, Gaudreault N, Bastien N, Conti M, Pagé S, et al.Transcriptomic Microenvironment of Lung Adenocarcinoma. Cancer Epidemiol Biomarkers Prev. 2017; 26(3):389–96.
Article
PubMed
Google Scholar
Fujiwara T, Hiramatsu M, Isagawa T, Ninomiya H, Inamura K, Ishikawa S, et al.ASCL1-coexpression profiling but not single gene expression profiling defines lung adenocarcinomas of neuroendocrine nature with poor prognosis. Lung Cancer. 2012; 75(1):119–25.
Article
PubMed
Google Scholar
Selamat SA, Chung BS, Girard L, Zhang W, Zhang Y, Campan M, et al.Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression. Genome Res. 2012; 22(7):1197–211.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kabbout M, Garcia MM, Fujimoto J, Liu DD, Woods D, Chow CW, et al.Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival. PLoS ONE. 2013; 19(13):3383–95.
CAS
Google Scholar
Wei TY, Juan CC, Hisa JY, Su LJ, Lee YC, Chou HY, et al.Protein arginine methyltransferase 5 is a potential oncoprotein that upregulates G1 cyclins/cyclin-dependent kinases and the phosphoinositide 3-kinase/AKT signaling cascade. Cancer Sci. 2012; 103(9):1640–50.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wei TY, Juan CC, Hisa JY, Su LJ, Juan CC, Lee YC, et al.Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival. Cell Signal. 2014; 26(12):2940–50.
Article
CAS
PubMed
Google Scholar
Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, et al.NCBI GEO: archive for functional genomics data sets–update. Nucleic Acids Res. 2013; 41(Database issue):D991—5.
PubMed
Google Scholar
Beane J, Mazzilli SA, Tassinari AM, Liu G, Zhang X, Liu H, et al.Detecting the Presence and Progression of Premalignant Lung Lesions via Airway Gene Expression. Clin Cancer Res Off J Am Assoc Cancer Res. 2017; 23(17):5091–100.
Article
CAS
Google Scholar
Colaprico A, Silva TC, Olsen C, Garofano L, Cava C, Garolini D, Sabedot TS, et al.TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data. Nucleic Acids Res. 2016; 44(8):e71.
Article
PubMed
Google Scholar
Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, et al.The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res. 2010; 38(13):214–33.
Article
Google Scholar
Cava C, Colaprico A, Bertoli G, Graudenzi A, Silva TC, Olsen C, et al.SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data. Int J Mol Sci. 2017; 18(2):E274.
Article
PubMed
Google Scholar
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, et al.Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003; 13(11):2498–504.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang R, Zhang Y, Pan Y, Li Y, Hu H, Cai D, Li H, et al.Comprehensive investigation of oncogenic driver mutations in Chinese non-small cell lung cancer patients. Oncotarget. 2015; 6(33):34300–8.
PubMed
PubMed Central
Google Scholar
Zhou Z, Liu S, Zhang M, Zhou R, Liu J, Chang Y, et al.Overexpression of Topoisomerase 2-Alpha Confers a Poor Prognosis in Pancreatic Adenocarcinoma Identified by Co-Expression Analysis. Dig Dis Sci. 2017; 62(10):2790–800.
Article
CAS
PubMed
Google Scholar
DeRita RM, Zerlanko B, Singh A, Lu H, Iozzo RV, Benovic JL, et al.c-Src, Insulin-Like Growth Factor I Receptor, G-Protein-Coupled Receptor Kinases and Focal Adhesion Kinase Are Enriched into Prostate Cancer Cell Exosomes. J Cell Biochem. 2016; 118(1):66–73.
Article
PubMed
PubMed Central
Google Scholar
Shi H, Ji Y, Zhang D, Liu Y, Fang P. MicroRNA-3666-induced suppression of SIRT7 inhibits the growth of non-small cell lung cancer cells. Oncol Rep. 2016; 36(5):3051–7.
Article
CAS
PubMed
Google Scholar
Nahar R, Zhai W, Zhang T, Takano A, Lee YY, Liu X, et al.Elucidating the genomic architecture of Asian EGFR-mutant lung adenocarcinoma through multi-region exome sequencing. Nat Commun. 2018; 9(1):216.
Article
PubMed
PubMed Central
Google Scholar
Chang WY, Wu YL, Su PL, Yang SC, Lin CC, Su WC. The impact of EGFR mutations on the incidence and survival of stages I to III NSCLC patients with subsequent brain metastasis. PloS ONE. 2018; 313(e):e0192161.
Article
Google Scholar
Misawa K, Mochizuki D, Imai A, Endo S, Mima M, Misawa Y, et al.Prognostic value of aberrant promoter hypermethylation of tumor-related genes in early-stage head and neck cancer. Oncotarget. 2016; 7(18):26087–98.
Article
PubMed
PubMed Central
Google Scholar