Volume 12 Supplement 7

UT-ORNL-KBRIN Bioinformatics Summit 2011

Meeting abstracts

Edited by Eric C Rouchka, Robert M Flight and Ramin Homayouni

10th Annual UT-ORNL-KBRIN Bioinformatics Summit 2011. Go to conference site.

Memphis, TN, USA1-3 April 2011

Concatenated PDF 12S7

Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011

Authors: Eric C Rouchka, Robert M Flight and Ramin Homayouni

Citation: BMC Bioinformatics 2011 12(Suppl 7):A1

Content type: Introduction

Published on: 5 August 2011
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Identification of alcohol preference relevant genes in QTL on mouse chromosome 2

Authors: Lishi Wang, Yan Jiao, Griffin Gibson, Xiaoyun Liu, Yue Huang, Beth Bennett, Kristin Hamre, Robert Williams and Weikuan Gu

Citation: BMC Bioinformatics 2011 12(Suppl 7):A2

Content type: Meeting abstract

Published on: 5 August 2011
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A novel noise handling method to improve clustering of gene expression patterns

Authors: Anindya Bhattacharya and Rajat K De

Citation: BMC Bioinformatics 2011 12(Suppl 7):A3

Content type: Meeting abstract

Published on: 5 August 2011
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Identifying the key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma using a systems biology approach

Authors: Siyuan Zheng and Zhongming Zhao

Citation: BMC Bioinformatics 2011 12(Suppl 7):A4

Content type: Meeting abstract

Published on: 5 August 2011
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Determining anion-quadrupole interactions among protein, DNA, and ligand molecules

Authors: Jason B Harris, David D Jenkins, Jonathan Reyles, Stephanie Rickett, Jordan M Utley, Elizabeth E Howell, Jerome Baudry and Robert J Hinde

Citation: BMC Bioinformatics 2011 12(Suppl 7):A5

Content type: Meeting abstract

Published on: 5 August 2011
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Integrative biclustering of heterogeneous datasets using a Bayesian nonparametric model with application to chemogenomics

Authors: Dazhuo Li and Eric C Rouchka

Citation: BMC Bioinformatics 2011 12(Suppl 7):A6

Content type: Meeting abstract

Published on: 5 August 2011
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mDAG: a web-based tool for analyzing microarray data with multiple treatments

Authors: Vinhthuy T Phan, Nam S Vo and Thomas R Sutter

Citation: BMC Bioinformatics 2011 12(Suppl 7):A7

Content type: Meeting abstract

Published on: 5 August 2011
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Protected Research Information Management Environment (PRIME) provides a secure open source data management option for clinical and scientific research

Authors: Teeradache Viangteeravat, Venkateswara Ra Nagisetty, Matthew N Anyanwu, Emin Kuscu, Ian M Brooks and Chanchai S McDonald

Citation: BMC Bioinformatics 2011 12(Suppl 7):A8

Content type: Meeting abstract

Published on: 5 August 2011
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Phage Eco-Locator: a web tool for visualization and analysis of phage genomes in metagenomic data sets

Authors: Ramy K Aziz, Bhakti Dwivedi, Mya Breitbart and Robert A Edwards

Citation: BMC Bioinformatics 2011 12(Suppl 7):A9

Content type: Meeting abstract

Published on: 5 August 2011
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PharmacoMicrobiomics or how bugs modulate drugs: an educational initiative to explore the effects of human microbiome on drugs

Authors: Ramy K Aziz, Rama Saad and Mariam R Rizkallah

Citation: BMC Bioinformatics 2011 12(Suppl 7):A10

Content type: Meeting abstract

Published on: 5 August 2011
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ColonyTrak: a web tool and database system for managing experimental animal models

Authors: Laasya Vadlamudi, Lynn A Jones and Ramin Homayouni

Citation: BMC Bioinformatics 2011 12(Suppl 7):A11

Content type: Meeting abstract

Published on: 5 August 2011
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Comparative studies of high-throughput biological graphs

Authors: Jonathan Reyles and Charles Phillips

Citation: BMC Bioinformatics 2011 12(Suppl 7):A12

Content type: Meeting abstract

Published on: 5 August 2011
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MSCTrees: a mean-shift based toolkit for cluster analysis of phylogenetic trees

Authors: Weixi Li and Jerzy W Jaromczyk

Citation: BMC Bioinformatics 2011 12(Suppl 7):A13

Content type: Meeting abstract

Published on: 5 August 2011
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Next-gen sequencing of multi-drug resistant Acinetobacter baumanii at Nashville General Hospital at Meharry

Authors: Leon Dent, Nahed Ismail, Steven Robinson, Gary Rogers, Siddharth Pratap and Dana Marshall

Citation: BMC Bioinformatics 2011 12(Suppl 7):A14

Content type: Meeting abstract

Published on: 5 August 2011
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Gene expression based prototype for automatic tumor prediction

Authors: Atiq Islam, Khan M Iftekharuddin and Olusegun E George

Citation: BMC Bioinformatics 2011 12(Suppl 7):A15

Content type: Meeting abstract

Published on: 5 August 2011
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categoryCompare: high-throughput data meta-analysis using gene annotations

Authors: Robert M Flight, Jeffrey C Petruska, Benjamin J Harrison and Eric C Rouchka

Citation: BMC Bioinformatics 2011 12(Suppl 7):A16

Content type: Meeting abstract

Published on: 5 August 2011
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Bioinformatic challenges for proteomic biomarkers of cancer

Authors: David L Tabb and Daniel C Liebler

Citation: BMC Bioinformatics 2011 12(Suppl 7):A17

Content type: Meeting abstract

Published on: 5 August 2011
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Integration of bioinformatics tools in candidate gene prioritization of co-regulated gene sets in Saccharomyces cerevisiae

Authors: Vida Abedi, Mohammed Yeasin and Thomas R Sutter

Citation: BMC Bioinformatics 2011 12(Suppl 7):A18

Content type: Meeting abstract

Published on: 5 August 2011
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Statistical analysis of microarray gene expression data from a mouse model of toxoplasmosis

Authors: Shrikant Pawar, Cheryl D Davis and Claire A Rinehart

Citation: BMC Bioinformatics 2011 12(Suppl 7):A19

Content type: Meeting abstract

Published on: 5 August 2011
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Meta-analysis of gene expression changes in response to radiation exposure

Authors: John Kirtley, Eric C Rouchka, Robert M Flight, Palaniappan Sethu, John W Eaton and Robert S Keynton

Citation: BMC Bioinformatics 2011 12(Suppl 7):A20

Content type: Meeting abstract

Published on: 5 August 2011
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UT-ORNL-KBRIN Bioinformatics Summit 2011

Meeting abstracts

Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011

Identification of alcohol preference relevant genes in QTL on mouse chromosome 2

A novel noise handling method to improve clustering of gene expression patterns

Identifying the key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma using a systems biology approach

Determining anion-quadrupole interactions among protein, DNA, and ligand molecules

Integrative biclustering of heterogeneous datasets using a Bayesian nonparametric model with application to chemogenomics

mDAG: a web-based tool for analyzing microarray data with multiple treatments

Protected Research Information Management Environment (PRIME) provides a secure open source data management option for clinical and scientific research

Phage Eco-Locator: a web tool for visualization and analysis of phage genomes in metagenomic data sets

PharmacoMicrobiomics or how bugs modulate drugs: an educational initiative to explore the effects of human microbiome on drugs

ColonyTrak: a web tool and database system for managing experimental animal models

Comparative studies of high-throughput biological graphs

MSCTrees: a mean-shift based toolkit for cluster analysis of phylogenetic trees

Next-gen sequencing of multi-drug resistant Acinetobacter baumanii at Nashville General Hospital at Meharry

Gene expression based prototype for automatic tumor prediction

categoryCompare: high-throughput data meta-analysis using gene annotations

Bioinformatic challenges for proteomic biomarkers of cancer

Integration of bioinformatics tools in candidate gene prioritization of co-regulated gene sets in Saccharomyces cerevisiae

Statistical analysis of microarray gene expression data from a mouse model of toxoplasmosis

Meta-analysis of gene expression changes in response to radiation exposure

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