Volume 18 Supplement 15

Selected articles from the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS): bioinformatics

Research

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.

Atlanta, GA, USA13-15 October 2016

Conference website

Edited by Ion Mandoiu, Sanguthevar Rajasekaran, Pavel Skums and Alex Zelikovsky.

Articles from this conference can also be found published in BMC Genomics.

Fast algorithms for computing phylogenetic divergence time

The inference of species divergence time is a key step in most phylogenetic studies. Methods have been available for the last ten years to perform the inference, but the performance of the methods does not yet...

Authors: Ralph W. Crosby and Tiffani L. Williams

Citation: BMC Bioinformatics 2017 18(Suppl 15):514

Content type: Research Published on: 6 December 2017
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Cache and energy efficient algorithms for Nussinov’s RNA Folding

An RNA folding/RNA secondary structure prediction algorithm determines the non-nested/pseudoknot-free structure by maximizing the number of complementary base pairs and minimizing the energy. Several implement...

Authors: Chunchun Zhao and Sartaj Sahni

Citation: BMC Bioinformatics 2017 18(Suppl 15):518

Content type: Research Published on: 6 December 2017
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Detecting intermediate protein conformations using algebraic topology

Understanding protein structure and dynamics is essential for understanding their function. This is a challenging task due to the high complexity of the conformational landscapes of proteins and their rugged e...

Authors: Nurit Haspel, Dong Luo and Eduardo González

Citation: BMC Bioinformatics 2017 18(Suppl 15):502

Content type: Research Published on: 6 December 2017
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CAMSA: a tool for comparative analysis and merging of scaffold assemblies

Despite the recent progress in genome sequencing and assembly, many of the currently available assembled genomes come in a draft form. Such draft genomes consist of a large number of genomic fragments (scaffolds)...

Authors: Sergey S. Aganezov and Max A. Alekseyev

Citation: BMC Bioinformatics 2017 18(Suppl 15):496

Content type: Research Published on: 6 December 2017
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RocSampler: regularizing overlapping protein complexes in protein-protein interaction networks

In recent years, protein-protein interaction (PPI) networks have been well recognized as important resources to elucidate various biological processes and cellular mechanisms. In this paper, we address the pro...

Authors: Osamu Maruyama and Yuki Kuwahara

Citation: BMC Bioinformatics 2017 18(Suppl 15):491

Content type: Research Published on: 6 December 2017
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Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites

Protein-protein interactions (PPI) play a key role in an investigation of various biochemical processes, and their identification is thus of great importance. Although computational prediction of which amino a...

Authors: Jan Jelínek, Petr Škoda and David Hoksza

Citation: BMC Bioinformatics 2017 18(Suppl 15):492

Content type: Research Published on: 6 December 2017
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A deep learning method for lincRNA detection using auto-encoder algorithm

RNA sequencing technique (RNA-seq) enables scientists to develop novel data-driven methods for discovering more unidentified lincRNAs. Meantime, knowledge-based technologies are experiencing a potential revolu...

Authors: Ning Yu, Zeng Yu and Yi Pan

Citation: BMC Bioinformatics 2017 18(Suppl 15):511

Content type: Research Published on: 6 December 2017
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Selected articles from the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS): bioinformatics

Research

Fast algorithms for computing phylogenetic divergence time

Cache and energy efficient algorithms for Nussinov’s RNA Folding

Detecting intermediate protein conformations using algebraic topology

CAMSA: a tool for comparative analysis and merging of scaffold assemblies

RocSampler: regularizing overlapping protein complexes in protein-protein interaction networks

Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites

A deep learning method for lincRNA detection using auto-encoder algorithm

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