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Volume 8 Supplement 1

Italian Society of Bioinformatics (BITS): Annual Meeting 2006

Research

Edited by Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole

Italian Society of Bioinformatics (BITS): Annual Meeting 2006. Go to conference site.

Bologna, Italy28-29 April, 2006

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  1. Content type: Research

    An in-silico experiment can be naturally specified as a workflow of activities implementing, in a standardized environment, the process of data and control analysis. A workflow has the advantage to be reproduc...

    Authors: Ezio Bartocci, Flavio Corradini, Emanuela Merelli and Lorenzo Scortichini

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S2

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  2. Content type: Research

    Peptidases are proteolytic enzymes responsible for fundamental cellular activities in all organisms. Apparently about 2–5% of the genes encode for peptidases, irrespectively of the organism source. The basic p...

    Authors: Lisa Bartoli, Remo Calabrese, Piero Fariselli, Damiano G Mita and Rita Casadio

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S3

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  3. Content type: Research

    Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim at describing the cell interactome. These ...

    Authors: Massimo Bernaschi, Filippo Castiglione, Alessandra Ferranti, Caius Gavrila, Michele Tinti and Gianni Cesareni

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S4

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  4. Content type: Research

    Microarrays have been widely used for the analysis of gene expression and several commercial platforms are available. The combined use of multiple platforms can overcome the inherent biases of each approach, a...

    Authors: Roberta Bosotti, Giuseppe Locatelli, Sandra Healy, Emanuela Scacheri, Luca Sartori, Ciro Mercurio, Raffaele Calogero and Antonella Isacchi

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S5

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  5. Content type: Research

    One of the most interesting problems in molecular immunology is epitope mapping, i.e. the identification of the regions of interaction between an antigen and an antibody. The solution to this problem, even if ...

    Authors: Tiziana Castrignanò, Paolo D'Onorio De Meo, Danilo Carrabino, Massimilano Orsini, Matteo Floris and Anna Tramontano

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S6

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  6. Content type: Research

    Several systems have been presented in the last years in order to manage the complexity of large microarray experiments. Although good results have been achieved, most systems tend to lack in one or more field...

    Authors: Ivan Porro, Livia Torterolo, Luca Corradi, Marco Fato, Adam Papadimitropoulos, Silvia Scaglione, Andrea Schenone and Federica Viti

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S7

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  7. Content type: Research

    The structure annotation of a genome is based either on ab initio methodologies or on similaritiy searches versus molecules that have been already annotated. Ab initio gene predictions in a genome are based on a ...

    Authors: Nunzio D'Agostino, Alessandra Traini, Luigi Frusciante and Maria Luisa Chiusano

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S9

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  8. Content type: Research

    Microarray time series studies are essential to understand the dynamics of molecular events. In order to limit the analysis to those genes that change expression over time, a first necessary step is to select ...

    Authors: Barbara Di Camillo, Gianna Toffolo, Sreekumaran K Nair, Laura J Greenlund and Claudio Cobelli

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S10

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  9. Content type: Research

    Activated Protein C (ProC) is an anticoagulant plasma serine protease which also plays an important role in controlling inflammation and cell proliferation. Several mutations of the gene are associated with ph...

    Authors: Pasqualina D'Ursi, Francesca Marino, Andrea Caprera, Luciano Milanesi, Elena M Faioni and Ermanna Rovida

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S11

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  10. Content type: Research

    The lysine, threonine, and methionine biosynthetic pathways share the three initial enzymatic steps, which are referred to as the Common Pathway (CP). In Escherichia coli three different aspartokinases (AKI, AKII...

    Authors: Marco Fondi, Matteo Brilli and Renato Fani

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S12

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  11. Content type: Research

    The increasing protein family and domain based annotations constitute important information to understand protein functions and gain insight into relations among their codifying genes. To allow analyzing of ge...

    Authors: Marco Masseroli, Elisa Bellistri, Andrea Franceschini and Francesco Pinciroli

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S14

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  12. Content type: Research

    Time course gene expression experiments are a popular means to infer co-expression. Many methods have been proposed to cluster genes or to build networks based on similarity measures of their expression dynami...

    Authors: Nicola Neretti, Daniel Remondini, Marc Tatar, John M Sedivy, Michela Pierini, Dawn Mazzatti, Jonathan Powell, Claudio Franceschi and Gastrone C Castellani

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S16

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  13. Content type: Research

    The Affymetrix™ technology is nowadays a well-established method for the analysis of gene expression profiles in cancer research studies. However, changes in gene expression levels are not the only way to link...

    Authors: Davide Rambaldi, Barbara Felice, Viviane Praz, Philip Bucher, Davide Cittaro and Alessandro Guffanti

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S17

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  14. Content type: Research

    The SYMBIOmatics Specific Support Action (SSA) is "an information gathering and dissemination activity" that seeks "to identify synergies between the bioinformatics and the medical informatics" domain to impro...

    Authors: Dietrich Rebholz-Schuhman, Graham Cameron, Dominic Clark, Erik van Mulligen, Jean-Louis Coatrieux, Eva Del Hoyo Barbolla, Fernando Martin-Sanchez, Luciano Milanesi, Ivan Porro, Francesco Beltrame, Ioannis Tollis and Johan Van der Lei

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S18

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  15. Content type: Research

    The huge amount of biological information, its distribution over the Internet and the heterogeneity of available software tools makes the adoption of new data integration and analysis network tools a necessity...

    Authors: Paolo Romano, Ezio Bartocci, Guglielmo Bertolini, Flavio De Paoli, Domenico Marra, Giancarlo Mauri, Emanuela Merelli and Luciano Milanesi

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S19

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  16. Content type: Research

    The p53 gene family consists of the three genes p53, p63 and p73, which have polyhedral non-overlapping functions in pivotal cellular processes such as DNA synthesis and repair, growth arrest, apoptosis, genom...

    Authors: Elisabetta Sbisà, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Francesco Caratozzolo, Anna Maria D'Erchia, Beatriz Navarro, Apollonia Tullo, Cecilia Saccone and Andreas Gisel

    Citation: BMC Bioinformatics 2007 8(Suppl 1):S20

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  • Citation Impact
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