Volume 14 Supplement 17

Proceedings of the 12th Annual UT-ORNL-KBRIN Bioinformatics Summit 2013

Meeting abstracts

Edited by Eric C Rouchka and Robert M Flight

Publication charges for this supplement were funded by the National Institutes of Health, National Institute of General Medical Sciences (NIH, NIGMS) P20GM103436-12 (Nigel Cooper, PI). The Supplement Editors declare that they have no competing interests.

12th Annual UT-ORNL-KBRIN Bioinformatics Summit 2013. Go to conference site.

Buchanan, TN, USA22-24 March 2013

Concatenated PDF 14S17

Proceedings of the Twelfth Annual UT-ORNL-KBRIN Bioinformatics Summit 2013

Authors: Eric C Rouchka and Robert M Flight

Citation: BMC Bioinformatics 2013 14(Suppl 17):A1

Content type: Introduction

Published on: 22 October 2013
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Subgroup and outlier detection analysis

Authors: Gang Wu, Iwona Pawlikowska, Tanja Gruber, James Downing, Jinghui Zhang and Stan Pounds

Citation: BMC Bioinformatics 2013 14(Suppl 17):A2

Content type: Meeting abstract

Published on: 22 October 2013
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Feature selection and prediction with a Markov blanket structure learning algorithm

Authors: Yuan Tan and Zhifa Liu

Citation: BMC Bioinformatics 2013 14(Suppl 17):A3

Content type: Meeting abstract

Published on: 22 October 2013
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A powerful association for comorbidity analysis based on score based test

Authors: Zhifa Liu

Citation: BMC Bioinformatics 2013 14(Suppl 17):A4

Content type: Meeting abstract

Published on: 22 October 2013
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Giving raw data a chance to talk: A demonstration of de-identified Pediatric Research Database (PRD) and exploratory analysis techniques for possible research cohort discovery and identifiable high risk factors for readmission

Authors: Teeradache Viangteeravat, Eunice Y Huang and Grady Wade

Citation: BMC Bioinformatics 2013 14(Suppl 17):A5

Content type: Meeting abstract

Published on: 22 October 2013
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The BLUES database: A health disparities registry for pregnant mothers

Authors: Somchan Vuthipadadon, Mark Sakauye, Emanuel Villa, Emin Kuscu, Netasha Bowers, Teresa Franklin, Linda Moses-Simmons and Ian M Brooks

Citation: BMC Bioinformatics 2013 14(Suppl 17):A6

Content type: Meeting abstract

Published on: 22 October 2013
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The α2-HeremansSchmid glycoprotein (AHSG) promotes growth in head and neck squamous cell carcinoma (HNSCC)

Authors: Pamela D Thompson, Amos Sakwe, Josiah Ochieng, Siddharth Pratap and Dana R Marshall

Citation: BMC Bioinformatics 2013 14(Suppl 17):A7

Content type: Meeting abstract

Published on: 22 October 2013
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Correlation of geographical distribution of mycobacteriophages with genomic clusters and genome distance

Authors: Miranda L Parrish and Claire A Rinehart

Citation: BMC Bioinformatics 2013 14(Suppl 17):A8

Content type: Meeting abstract

Published on: 22 October 2013
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Comparison of codon usage in mycobacteriophages with and without tRNAs in their genomes

Authors: Ethan S Gill and Claire A Rinehart

Citation: BMC Bioinformatics 2013 14(Suppl 17):A9

Content type: Meeting abstract

Published on: 22 October 2013
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Ab Initio prediction of mycobacteriophages protein structure and function

Authors: Chiraag D Kapadia and Claire A Rinehart

Citation: BMC Bioinformatics 2013 14(Suppl 17):A10

Content type: Meeting abstract

Published on: 22 October 2013
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Differential coexpression network modules observed in human hepatocellular carcinoma progression

Authors: Hui Yu and Zhongming Zhao

Citation: BMC Bioinformatics 2013 14(Suppl 17):A11

Content type: Meeting abstract

Published on: 22 October 2013
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A systems biology approach to elucidating epigenetic regulation of cardiac hypertrophy

Authors: Gipsy Majumdar and Rajendra Raghow

Citation: BMC Bioinformatics 2013 14(Suppl 17):A12

Content type: Meeting abstract

Published on: 22 October 2013
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Network analysis of gene fusions in human cancer

Authors: Morgan Harrell, Junfeng Xia and Zhongming Zhao

Citation: BMC Bioinformatics 2013 14(Suppl 17):A13

Content type: Meeting abstract

Published on: 22 October 2013
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Identifying transcription factor and microRNA mediated synergetic regulatory networks in lung cancer

Authors: Ramkrishna Mitra, Jingchun Sun, Min Zhao and Zhongming Zhao

Citation: BMC Bioinformatics 2013 14(Suppl 17):A14

Content type: Meeting abstract

Published on: 22 October 2013
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A short tutorial in analyzing NGS data of cancer genomes for somatic mutation calling

Authors: Huy Vuong and Zhongming Zhao

Citation: BMC Bioinformatics 2013 14(Suppl 17):A15

Content type: Meeting abstract

Published on: 22 October 2013
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Power and sample size of two-stage extreme phenotype sequencing design for next generation sequencing studies

Authors: Guolian Kang

Citation: BMC Bioinformatics 2013 14(Suppl 17):A16

Content type: Meeting abstract

Published on: 22 October 2013
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FPD2GB2: Automating a transition from a customized genome browser to GBrowse2

Authors: Roger Chui, Jerzy W Jaromczyk, Neil Moore and Christopher L Schardl

Citation: BMC Bioinformatics 2013 14(Suppl 17):A17

Content type: Meeting abstract

Published on: 22 October 2013
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Using HPC for teaching and learning bioinformatics software: Benefits and challenges

Authors: Tyler Parke, Mark Farman, Elizabeth Farnsworth, Derek Fox, Jerzy W Jaromczyk, Jolanta Jaromczyk, Neil Moore, Christopher L Schardl, Ruriko Yoshida and Pat Calie

Citation: BMC Bioinformatics 2013 14(Suppl 17):A18

Content type: Meeting abstract

Published on: 22 October 2013
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Our strategy to achieve and document reproducible computing

Authors: Nisrine Enyinda, Zhifa Liu, Areg Negatu and Stan Pounds

Citation: BMC Bioinformatics 2013 14(Suppl 17):A19

Content type: Meeting abstract

Published on: 22 October 2013
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Using partially ordered sets to represent and predict true patterns of gene response to treatments

Authors: Nam S Vo and Vinhthuy Phan

Citation: BMC Bioinformatics 2013 14(Suppl 17):A20

Content type: Meeting abstract

Published on: 22 October 2013
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Empirical Bayesian selection of hypothesis testing procedures for analysis of digital gene expression data

Authors: Stan Pounds and Cuilan Gao

Citation: BMC Bioinformatics 2013 14(Suppl 17):A21

Content type: Meeting abstract

Published on: 22 October 2013
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Genomic and proteomic characterization of multi-drug resistant Acinetobacter baumannii

Authors: Dana Marshall, Siddharth Pratap, Jianan Dong, Gary Rogers and L Leon Dent

Citation: BMC Bioinformatics 2013 14(Suppl 17):A22

Content type: Meeting abstract

Published on: 22 October 2013
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Proceedings of the 12th Annual UT-ORNL-KBRIN Bioinformatics Summit 2013

Meeting abstracts

Proceedings of the Twelfth Annual UT-ORNL-KBRIN Bioinformatics Summit 2013

Subgroup and outlier detection analysis

Feature selection and prediction with a Markov blanket structure learning algorithm

A powerful association for comorbidity analysis based on score based test

Giving raw data a chance to talk: A demonstration of de-identified Pediatric Research Database (PRD) and exploratory analysis techniques for possible research cohort discovery and identifiable high risk factors for readmission

The BLUES database: A health disparities registry for pregnant mothers

The α2-HeremansSchmid glycoprotein (AHSG) promotes growth in head and neck squamous cell carcinoma (HNSCC)

Correlation of geographical distribution of mycobacteriophages with genomic clusters and genome distance

Comparison of codon usage in mycobacteriophages with and without tRNAs in their genomes

Ab Initio prediction of mycobacteriophages protein structure and function

Differential coexpression network modules observed in human hepatocellular carcinoma progression

A systems biology approach to elucidating epigenetic regulation of cardiac hypertrophy

Network analysis of gene fusions in human cancer

Identifying transcription factor and microRNA mediated synergetic regulatory networks in lung cancer

A short tutorial in analyzing NGS data of cancer genomes for somatic mutation calling

Power and sample size of two-stage extreme phenotype sequencing design for next generation sequencing studies

FPD2GB2: Automating a transition from a customized genome browser to GBrowse2

Using HPC for teaching and learning bioinformatics software: Benefits and challenges

Our strategy to achieve and document reproducible computing

Using partially ordered sets to represent and predict true patterns of gene response to treatments

Empirical Bayesian selection of hypothesis testing procedures for analysis of digital gene expression data

Genomic and proteomic characterization of multi-drug resistant Acinetobacter baumannii

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