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Volume 18 Supplement 12

Selected articles from the 12th International Symposium on Bioinformatics Research and Applications (ISBRA 2016): bioinformatics

Research

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.

Minsk, Belarus5-8 June 2016

Edited by Alex Zelikovsky, Ion Mandoiu and Pavel Skums

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  1. Drug Combination is one of the effective approaches for treating complex diseases. However, determining combinative drug pairs in clinical trials is still costly. Thus, computational approaches are used to ide...

    Authors: Jian-Yu Shi, Jia-Xin Li, Ke Gao, Peng Lei and Siu-Ming Yiu

    Citation: BMC Bioinformatics 2017 18(Suppl 12):409

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  2. Long non-coding RNA (lncRNA) plays important roles in many biological and pathological processes, including transcriptional regulation and gene regulation. As lncRNA interacts with multiple proteins, predicting l...

    Authors: Xiaoxiong Zheng, Yang Wang, Kai Tian, Jiaogen Zhou, Jihong Guan, Libo Luo and Shuigeng Zhou

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  3. Predicting protein complexes from protein-protein interaction (PPI) networks has been studied for decade. Various methods have been proposed to address some challenging issues of this problem, including overla...

    Authors: Bin Xu, Yang Wang, Zewei Wang, Jiaogen Zhou, Shuigeng Zhou and Jihong Guan

    Citation: BMC Bioinformatics 2017 18(Suppl 12):419

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  4. Chromosomal deletions represent an important class of human genetic variation. Various methods have been developed to mine “next-generation” sequencing (NGS) data to detect deletions and quantify their clonal ...

    Authors: Colleen M. Bosworth, Sneha Grandhi, Meetha P. Gould and Thomas LaFramboise

    Citation: BMC Bioinformatics 2017 18(Suppl 12):407

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  6. The binding of small ligands to RNA elements can cause substantial changes in the RNA structure. This constitutes an important, fast-acting mechanism of ligand-controlled transcriptional and translational gene...

    Authors: Felix Kühnl, Peter F. Stadler and Sebastian Will

    Citation: BMC Bioinformatics 2017 18(Suppl 12):424

    Content type: Research

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  7. The constant progress in sequencing technology leads to ever increasing amounts of genomic data. In the light of current evidence transposable elements (TEs for short) are becoming useful tools for learning ab...

    Authors: Michał Piotr Startek, Jakub Nogły, Agnieszka Gromadka, Dariusz Grzebelus and Anna Gambin

    Citation: BMC Bioinformatics 2017 18(Suppl 12):422

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  8. The recent release of the gene-targeted metagenomics assembler Xander has demonstrated that using the trained Hidden Markov Model (HMM) to guide the traversal of de Bruijn graph gives obvious advantage over other...

    Authors: Dinghua Li, Yukun Huang, Chi-Ming Leung, Ruibang Luo, Hing-Fung Ting and Tak-Wah Lam

    Citation: BMC Bioinformatics 2017 18(Suppl 12):408

    Content type: Software

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  10. Methylation is a common modification of DNA. It has been a very important and hot topic to study the correlation between methylation and diseases in medical science. Because of the special process with bisulfi...

    Authors: Min Li, Ping Huang, Xiaodong Yan, Jianxin Wang, Yi Pan and Fang-Xiang Wu

    Citation: BMC Bioinformatics 2017 18(Suppl 12):410

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  11. Studies have shown that enhancers are significant regulatory elements to play crucial roles in gene expression regulation. Since enhancers are unrelated to the orientation and distance to their target genes, i...

    Authors: Hongda Bu, Yanglan Gan, Yang Wang, Shuigeng Zhou and Jihong Guan

    Citation: BMC Bioinformatics 2017 18(Suppl 12):418

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  13. Genome rearrangements are essential processes for evolution and are responsible for existing varieties of genome architectures. Many studies have been conducted to obtain an algorithm that identifies the minim...

    Authors: Ghada H. Badr and Haifa A. Al-aqel

    Citation: BMC Bioinformatics 2017 18(Suppl 12):427

    Content type: Research

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