Volume 6 Supplement 3

BioSysBio: Bioinformatics and Systems Biology Conference

Meeting abstracts

BioSysBio: Bioinformatics and Systems Biology Conference.

Edinburgh, UK14-15 July 2005

Concatenated PDF 6S3

Content type: Oral presentation

Transcription regulation: a genomic network

Authors: Nicholas Luscombe

Citation: BMC Bioinformatics 2005 6(Suppl 3):S1

Published on: 21 September 2005
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Content type: Oral presentation

Biological clocks in theory and experiments

Authors: Andrew J Millar

Citation: BMC Bioinformatics 2005 6(Suppl 3):S2

Published on: 21 September 2005
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Content type: Oral presentation

The evolutionary origin of protein complexes

Authors: Jose Pereira-Leal

Citation: BMC Bioinformatics 2005 6(Suppl 3):S3

Published on: 21 September 2005
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Content type: Oral presentation

Inferring gene regulatory networks from classified microarray data: Initial results

Authors: Stuart Aitken, Thanyaluk Jirapech-Umpai and Ronan Daly

Citation: BMC Bioinformatics 2005 6(Suppl 3):S4

Published on: 21 September 2005
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Content type: Oral presentation

Investigation of mRNA Splicing in Saccharomyces cerevisiae using Microarrays

Authors: J David Barrass and Jean D Beggs

Citation: BMC Bioinformatics 2005 6(Suppl 3):S5

Published on: 21 September 2005
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Content type: Oral presentation

Living longer by dieting: analysis of transcriptional response after caloric restriction

Authors: Nicola D Kerrison, Colin Selman, Steven J Lingard, Janet M Thornton, Linda Partridge and Dominic J Withers

Citation: BMC Bioinformatics 2005 6(Suppl 3):S6

Published on: 21 September 2005
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Content type: Oral presentation

Computational inference of regulator activity in a single input motif from gene expression data

Authors: Raya Khanin, Veronica Vinciotti, Vassilis Mersinias, Colin Smith and Ernst Wit

Citation: BMC Bioinformatics 2005 6(Suppl 3):S7

Published on: 21 September 2005
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Content type: Oral presentation

Extraction of Genetic Networks (GN) Using Static Bayesian Belief Networks From Genome-Wide Temporal Microarray Data

Authors: Judit Kumuthini

Citation: BMC Bioinformatics 2005 6(Suppl 3):S8

Published on: 21 September 2005
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Content type: Oral presentation

Amino-Acid Substitutions In Membrane Proteins: Applications To Homology Recognition And Comparative Modelling

Authors: Younes Mokrab and Kenji Mizuguchi

Citation: BMC Bioinformatics 2005 6(Suppl 3):S9

Published on: 21 September 2005
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Content type: Oral presentation

Nestor3D: multiple alignment of protein structures based on ligand or prosthetic group position

Authors: Jean-Christophe Nebel

Citation: BMC Bioinformatics 2005 6(Suppl 3):S10

Published on: 21 September 2005
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Content type: Oral presentation

N-terminal sequence-based prediction of subcellular location

Authors: Evangelia I Petsalakis, Pantelis G Bagos, Zoi I Litou and Stavros J Hamodrakas

Citation: BMC Bioinformatics 2005 6(Suppl 3):S11

Published on: 21 September 2005
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Content type: Oral presentation

Metabolic Network Analysis: Implication And Application

Authors: Syed Asad Rahman, Pardha Saradhi Jonnalagadda, Jyothi Padiadpu, Kai Hartmann, Rainer Schrader and Dietmar Schomburg

Citation: BMC Bioinformatics 2005 6(Suppl 3):S12

Published on: 21 September 2005
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Content type: Oral presentation

Nonlinear Data Mining of Microarray Data Using Michaelis Menten Functions

Authors: Dov J Stekel, Tim W Overton, Jon L Hobman, Charles W Penn, Jeff A Cole and Chrystala Constantinidou

Citation: BMC Bioinformatics 2005 6(Suppl 3):S13

Published on: 21 September 2005
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Content type: Oral presentation

Prioritisation of Disease Gene Candidates: A Systems Biology Approach

Authors: Frances S Turner

Citation: BMC Bioinformatics 2005 6(Suppl 3):S14

Published on: 21 September 2005
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Content type: Oral presentation

The Important Role of Calcium in Regulation of Adhesion Disassembly and Cell Migration: Mathematical Modelling

Authors: Najl Valeyev, Andrei Skorinkin, Kristy Downing, Iain Campbell and Nikolai Kotov

Citation: BMC Bioinformatics 2005 6(Suppl 3):S15

Published on: 21 September 2005
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Content type: Poster presentation

Speeding Disease Gene Discovery with SUSPECTS

Authors: Euan Adie

Citation: BMC Bioinformatics 2005 6(Suppl 3):P1

Published on: 21 September 2005
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Content type: Poster presentation

Sequence Analysis In Promoter Regions

Authors: Jeremy Austin

Citation: BMC Bioinformatics 2005 6(Suppl 3):P2

Published on: 21 September 2005
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Content type: Poster presentation

Use Of Neural Networks To Predict And Analyse Membrane Proteins In The Proteome

Authors: Subrata K Bose, Hassan Kazemian, Kenneth White and Antony Browne

Citation: BMC Bioinformatics 2005 6(Suppl 3):P3

Published on: 21 September 2005
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Content type: Poster presentation

Codon pair bias in prokaryotic and eukaryotic genomes

Authors: Ross Buchan and Ian Stansfield

Citation: BMC Bioinformatics 2005 6(Suppl 3):P4

Published on: 21 September 2005
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Content type: Poster presentation

NanoSNP: A computational platform for high throughput Quantum Dot encoded microsphere SNP genotyping

Authors: Colin Clarke, Michael Malecha and Selly Saini

Citation: BMC Bioinformatics 2005 6(Suppl 3):P5

Published on: 21 September 2005
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Content type: Poster presentation

Using Comparative Genomics & RNA Structure to Find RNA Editing Sites

Authors: Daniel Clutterbuck

Citation: BMC Bioinformatics 2005 6(Suppl 3):P6

Published on: 21 September 2005
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Content type: Poster presentation

ZF-Human Disease Database: A Database for Zebrafish Models of Human Genetic Diseases

Authors: Pedro Coutinho

Citation: BMC Bioinformatics 2005 6(Suppl 3):P7

Published on: 21 September 2005
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Content type: Poster presentation

Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data

Authors: Paul Craig, Jessie Kennedy and Andrew Cumming

Citation: BMC Bioinformatics 2005 6(Suppl 3):P8

Published on: 21 September 2005
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Content type: Poster presentation

Computational Analysis of Insulin in the Ageing Fruit Fly

Authors: John Cumbers and J Douglas Armstrong

Citation: BMC Bioinformatics 2005 6(Suppl 3):P9

Published on: 21 September 2005
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Content type: Poster presentation

Text-mining, milk proteins and nutraceutical potential – the MilkER project

Authors: Stephen Edwards, Bonnie Webber, Carl Holt and Lindsay Sawyer

Citation: BMC Bioinformatics 2005 6(Suppl 3):P10

Published on: 21 September 2005
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Content type: Poster presentation

Integration of open source software tools for the in silico design of metabolic pathways using flux balance analysis – an application to the production of recombinant human proteins

Authors: Ana Sofia Figueiredo

Citation: BMC Bioinformatics 2005 6(Suppl 3):P11

Published on: 21 September 2005
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Content type: Poster presentation

PROVAT – a versatile tool for Voronoi tessellation analysis of protein structures and complexes

Authors: Swanand P Gore, David F Burke and Tom L Blundell

Citation: BMC Bioinformatics 2005 6(Suppl 3):P12

Published on: 21 September 2005
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Content type: Poster presentation

GPX – An Integrative Environment for the Storage and Retrieval of Raw and Processed Microarray Data

Authors: Graeme Grimes

Citation: BMC Bioinformatics 2005 6(Suppl 3):P13

Published on: 21 September 2005
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Content type: Poster presentation

CaliBayes: Integration of GRID based simulation and data resources for Bayesian calibration of biological models

Authors: Richard Boys, Daniel Henderson, Tom Kirkwood, Darren Wilkinson and W Eryk Wolski

Citation: BMC Bioinformatics 2005 6(Suppl 3):P14

Published on: 21 September 2005
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Content type: Poster presentation

System level visualization of eQTLs and pQTLs

Authors: Joanna Jakubowska, Ela Hunt, Matthew Chalmers, David Leader, Martin McBride and Anna F Dominiczak

Citation: BMC Bioinformatics 2005 6(Suppl 3):P15

Published on: 21 September 2005
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Content type: Poster presentation

Gene Expression-Based Cross Species Tissue Mapping

Authors: Ajit Kumar Gopee

Citation: BMC Bioinformatics 2005 6(Suppl 3):P16

Published on: 21 September 2005
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Content type: Poster presentation

An analysis of allele sharing in a region of linkage with bipolar affective disorder

Authors: Andrew Lee

Citation: BMC Bioinformatics 2005 6(Suppl 3):P17

Published on: 21 September 2005
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Content type: Poster presentation

Evolution@home: Global computing quantifies evolution due to Muller's ratchet

Authors: Laurence Loewe

Citation: BMC Bioinformatics 2005 6(Suppl 3):P18

Published on: 21 September 2005
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Content type: Poster presentation

Automated Terminological and Structural Analysis of Human-Mouse Anatomical Ontology Mappings

Authors: Sarah Luger, Stuart Aitken and Bonnie Webber

Citation: BMC Bioinformatics 2005 6(Suppl 3):P19

Published on: 21 September 2005
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Content type: Poster presentation

Theoretical and quantitative aspects of iron acquisition by a bovine isolate of Pasteurella multocida A:3

Authors: Sandy J Macdonald, Colin W Bayne, Malcolm Quirie, Frederick A Lainson, Junli Liu and John C Hodgson

Citation: BMC Bioinformatics 2005 6(Suppl 3):P20

Published on: 21 September 2005
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Content type: Poster presentation

Modelling Lipid Metabolism to Improve Healthy Ageing

Authors: Mark Mc Auley, Janette Jones, Darren Wilkinson and Tom Kirkwood

Citation: BMC Bioinformatics 2005 6(Suppl 3):P21

Published on: 21 September 2005
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Content type: Poster presentation

Bioinformatics in phylogeography: analitical methods and applications

Authors: Oscar Moya Mesa, Hermans Goar Contreras Díaz, Pedro Oromí Masoliver and Carlos Juan Clar

Citation: BMC Bioinformatics 2005 6(Suppl 3):P22

Published on: 21 September 2005
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Content type: Poster presentation

Genomics and Pathway Biology – a new post-genomics M.Sc. programme from Edinburgh University

Authors: Douglas Roy and Peter Ghazal

Citation: BMC Bioinformatics 2005 6(Suppl 3):P23

Published on: 21 September 2005
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Content type: Poster presentation

Distinguishing between enzyme sequences & non-enzymes without using alignments

Authors: Ajanthah Sangaralingam and Andrew J Doig

Citation: BMC Bioinformatics 2005 6(Suppl 3):P24

Published on: 21 September 2005
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Content type: Poster presentation

Stochastic Petri Nets in Systems Biology

Authors: Ole Schulz-Trieglaff

Citation: BMC Bioinformatics 2005 6(Suppl 3):P25

Published on: 21 September 2005
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Extracting Genetic Pathways From Text and Grounding at the Spatio-Temporal Level

Authors: Gail Sinclair, Bonnie Webber and Duncan Davidson

Citation: BMC Bioinformatics 2005 6(Suppl 3):P26

Published on: 21 September 2005
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Content type: Poster presentation

Exploring Parasite Gene Space

Authors: James Wasmuth, Ralf Schmid, Alasdair Anthony, John Parkinson and Mark Blaxter

Citation: BMC Bioinformatics 2005 6(Suppl 3):P27

Published on: 21 September 2005
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Content type: Poster presentation

Jalview: Visualization and Analysis of Molecular Sequences, Alignments, and Structures

Authors: Andrew Waterhouse, Jim Procter, David A Martin and Geoffrey J Barton

Citation: BMC Bioinformatics 2005 6(Suppl 3):P28

Published on: 21 September 2005
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Content type: Poster presentation

A Method of Gene Expression Data Partitioning for the Construction of Context-Sensitive PBNs

Authors: Le Yu and Stephen Marshall

Citation: BMC Bioinformatics 2005 6(Suppl 3):P29

Published on: 21 September 2005
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BioSysBio: Bioinformatics and Systems Biology Conference

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