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Volume 12 Supplement 13

Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Bioinformatics

Proceedings

Edited by Shoba Ranganathan, Christian Schoenbach, Sheila Nathan and Tin Wee Tan

Asia Pacific Bioinformatics Network (APBioNet) Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB2011/ISCB-Asia 2011). Go to conference site.

Kuala Lumpur, Malaysia30 November - 2 December 2011

  1. The 2011 International Conference on Bioinformatics (InCoB) conference, which is the annual scientific conference of the Asia-Pacific Bioinformatics Network (APBioNet), is hosted by Kuala Lumpur, Malaysia, is ...

    Authors: Shoba Ranganathan, Christian Schönbach, Janet Kelso, Burkhard Rost, Sheila Nathan and Tin Wee Tan
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S1
    Content type: Introduction Published on:

  3. The collection of gene expression profiles from DNA microarrays and their analysis with pattern recognition algorithms is a powerful technology applied to several biological problems. Common pattern recognitio...

    Authors: Alfredo Benso, Stefano Di Carlo, Gianfranco Politano, Alessandro Savino and Hafeez Hafeezurrehman
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S3
    Content type: Proceedings Published on:

  4. DNA barcoding technology, which uses a short piece of DNA sequence to identify species, has wide ranges of applications. Until today, a universal DNA barcode marker for plants remains elusive. The rbc L and mat K...

    Authors: Chang Liu, Dong Liang, Ting Gao, Xiaohui Pang, Jingyuan Song, Hui Yao, Jianping Han, Zhihua Liu, Xiaojun Guan, Kun Jiang, Huan Li and Shilin Chen
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S4
    Content type: Proceedings Published on:

  5. Regulation of gene expression, protein synthesis, replication and assembly of many viruses involve RNA–protein interactions. Although some successful computational tools have been reported to recognize RNA bin...

    Authors: Michael Fernandez, Yutaro Kumagai, Daron M Standley, Akinori Sarai, Kenji Mizuguchi and Shandar Ahmad
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S5
    Content type: Proceedings Published on:

  6. PB1-F2 is a major virulence factor of influenza A. This protein is a product of an alternative reading frame in the PB1-encoding RNA segment 2. Its presence of is dictated by the presence or absence of prematu...

    Authors: David S DeLuca, Derin B Keskin, Guang Lan Zhang, Ellis L Reinherz and Vladimir Brusic
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S6
    Content type: Proceedings Published on:

  8. Clustering-based methods on gene-expression analysis have been shown to be useful in biomedical applications such as cancer subtype discovery. Among them, Matrix factorization (MF) is advantageous for clusteri...

    Authors: Mi Hyeon Kim, Hwa Jeong Seo, Je-Gun Joung and Ju Han Kim
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S8
    Content type: Proceedings Published on:

  9. One of the primary goals of comparative metagenomic projects is to study the differences in the microbial communities residing in diverse environments. Besides providing valuable insights into the inherent str...

    Authors: Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Hannah Rajasingh, Sudha Chadaram and Sharmila S Mande
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S9
    Content type: Proceedings Published on:

  10. Carboxylation is a modification of glutamate (Glu) residues which occurs post-translation that is catalyzed by γ-glutamyl carboxylase in the lumen of the endoplasmic reticulum. Vitamin K is a critical co-facto...

    Authors: Tzong-Yi Lee, Cheng-Tsung Lu, Shu-An Chen, Neil Arvin Bretaña, Tzu-Hsiu Cheng, Min-Gang Su and Kai-Yao Huang
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S10
    Content type: Proceedings Published on:

  11. Previously, the hypothetical protein, KPN00728 from Klebsiella pneumoniae MGH78578 was the Succinate dehydrogenase (SDH) chain C subunit via structural prediction and molecular docking simulation studies. However...

    Authors: Sy Bing Choi, Yahaya M Normi and Habibah A Wahab
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S11
    Content type: Proceedings Published on:

  12. This study assesses four predictive ecological models; Fuzzy Logic (FL), Recurrent Artificial Neural Network (RANN), Hybrid Evolutionary Algorithm (HEA) and multiple linear regressions (MLR) to forecast chloro...

    Authors: Sorayya Malek, Sharifah Mumtazah Syed Ahmad, Sarinder Kaur Kashmir Singh, Pozi Milow and Aishah Salleh
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S12
    Content type: Proceedings Published on:

  13. LRP6 is a membrane protein crucial in the initiation of canonical Wnt/β-catenin signalling. Its function is dependent on its proline-serine rich intracellular domain. LRP6 has five PPP(S/T)P motifs that are ph...

    Authors: Chengcheng Liu, Mingxi Yao and Christopher WV Hogue
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S13
    Content type: Proceedings Published on:

  14. Many methods have been developed to infer and reason about molecular interaction networks. These approaches often yield networks with hundreds or thousands of nodes and up to an order of magnitude more edges. ...

    Authors: Christopher L Poirel, Clifford C Owens III and T M Murali
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S14
    Content type: Proceedings Published on:

  15. While contemporary methods of microarray analysis are excellent tools for studying individual microarray datasets, they have a tendency to produce different results from different datasets of the same disease....

    Authors: Donny Soh, Difeng Dong, Yike Guo and Limsoon Wong
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S15
    Content type: Proceedings Published on:

  16. A genetic interaction refers to the deviation of phenotypes from the expected when perturbing two genes simultaneously. Studying genetic interactions help clarify relationships between genes, such as compensat...

    Authors: Chien-Hsiang Hsu, Tse-Yi Wang, Hsueh-Ting Chu, Cheng-Yan Kao and Kuang-Chi Chen
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S16
    Content type: Proceedings Published on:

  19. Essential events of cell development and homeostasis are revealed by the associated changes of cell morphology and therefore have been widely used as a key indicator of physiological states and molecular pathw...

    Authors: Merlin Veronika, Roy Welsch, Alvin Ng, Paul Matsudaira and Jagath C Rajapakse
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S19
    Content type: Proceedings Published on:

  20. Schizophrenia, bipolar disorder, and major depression are devastating mental diseases, each with distinctive yet overlapping epidemiologic characteristics. Microarray and proteomics data have revealed genes wh...

    Authors: Sheng-An Lee, Theresa Tsun-Hui Tsao, Ko-Chun Yang, Han Lin, Yu-Lun Kuo, Chien-Hsiang Hsu, Wen-Kuei Lee, Kuo-Chuan Huang and Cheng-Yan Kao
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S20
    Content type: Proceedings Published on:

  21. Prediction of short stretches in protein sequences capable of forming amyloid-like fibrils is important in understanding the underlying cause of amyloid illnesses thereby aiding in the discovery of sequence-ta...

    Authors: Smitha Sunil Kumaran Nair, NV Subba Reddy and KS Hareesha
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S21
    Content type: Proceedings Published on:

  22. Herpes Simplex Virus 1 and 2 causes several infections in humans including cold sores and encephalitis. Previous antiviral studies on herpes viruses have focussed on developing nucleoside analogues that can in...

    Authors: Abhinav Grover, Vibhuti Agrawal, Ashutosh Shandilya, Virendra S Bisaria and Durai Sundar
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S22
    Content type: Proceedings Published on:

  23. The cervical cancer is the second most prevalent cancer for the woman in the world. It is caused by the oncogenic human papilloma virus (HPV). The inhibition activity of histone deacetylase (HDAC) is a potenti...

    Authors: Usman SF Tambunan, N Bramantya and Arli A Parikesit
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S23
    Content type: Proceedings Published on:

  24. The dengue virus is the most significant arthropod-borne human pathogen, and an increasing number of cases have been reported over the last few decades. Currently neither vaccines nor drugs against the dengue ...

    Authors: See Ven Lim, Mohd Basyaruddin A Rahman and Bimo A Tejo
    Citation: BMC Bioinformatics 2011 12(Suppl 13):S24
    Content type: Proceedings Published on:
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