Volume 14 Supplement 14
Proceedings of the Tenth Annual MCBIOS Conference
Proceedings
Edited by Jonathan D Wren (Senior Editor), Mikhail G Dozmorov, Dennis Burian, Rakesh Kaundal, Andy Perkins, Ed Perkins, Doris M Kupfer and Gordon K Springer
Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. Articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.
Tenth Annual MCBIOS Conference. Discovery in a sea of data. Go to conference site.
Columbia, MO, USA5-6 April 2013
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Citation: BMC Bioinformatics 2013 14(Suppl 14):S1
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Systematic classification of non-coding RNAs by epigenomic similarity
Even though only 1.5% of the human genome is translated into proteins, recent reports indicate that most of it is transcribed into non-coding RNAs (ncRNAs), which are becoming the subject of increased scientif...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S2 -
Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment
Pathway alterations reflected as changes in gene expression regulation and gene interaction can result from cellular exposure to toxicants. Such information is often used to elucidate toxicological modes of ac...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S3 -
Towards the integration, annotation and association of historical microarray experiments with RNA-seq
Transcriptome analysis by microarrays has produced important advances in biomedicine. For instance in multiple myeloma (MM), microarray approaches led to the development of an effective disease subtyping via c...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S4 -
A cross disciplinary study of link decay and the effectiveness of mitigation techniques
The dynamic, decentralized world-wide-web has become an essential part of scientific research and communication. Researchers create thousands of web sites every year to share software, data and services. These...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S5 -
Homology modeling, molecular docking, and molecular dynamics simulations elucidated α-fetoprotein binding modes
An important mechanism of endocrine activity is chemicals entering target cells via transport proteins and then interacting with hormone receptors such as the estrogen receptor (ER). α-Fetoprotein (AFP) is a m...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S6 -
Identification and characterization of plastid-type proteins from sequence-attributed features using machine learning
Plastids are an important component of plant cells, being the site of manufacture and storage of chemical compounds used by the cell, and contain pigments such as those used in photosynthesis, starch synthesis...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S7 -
BinAligner: a heuristic method to align biological networks
The advances in high throughput omics technologies have made it possible to characterize molecular interactions within and across various species. Alignments and comparison of molecular networks across species...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S8 -
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors
Dicer, an RNase III enzyme, plays a vital role in the processing of pre-miRNAs for generating the miRNAs. The structural and sequence features on pre-miRNA which can facilitate position and efficiency of cleav...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S9 -
Towards human-computer synergetic analysis of large-scale biological data
Advances in technology have led to the generation of massive amounts of complex and multifarious biological data in areas ranging from genomics to structural biology. The volume and complexity of such data lea...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S10 -
A systems approach for analysis of high content screening assay data with topic modeling
High Content Screening (HCS) has become an important tool for toxicity assessment, partly due to its advantage of handling multiple measurements simultaneously. This approach has provided insight and contribut...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S11 -
A study and benchmark of DNcon: a method for protein residue-residue contact prediction using deep networks
In recent years, the use and importance of predicted protein residue-residue contacts has grown considerably with demonstrated applications such as drug design, protein tertiary structure prediction and model ...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S12 -
SASD: the S ynthetic A lternative S plicing D atabase for identifying novel isoform from proteomics
Alternative splicing is an important and widespread mechanism for generating protein diversity and regulating protein expression. High-throughput identification and analysis of alternative splicing in the prot...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S13 -
Circles within circles: crosstalk between protein Ser/Thr/Tyr-phosphorylation and Met oxidation
Reversible posttranslational protein modifications such as phosphorylation of Ser/Thr/Tyr and Met oxidation are critical for both metabolic regulation and cellular signalling. Although these modifications are ...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S14 -
Data mining tools for Salmonella characterization: application to gel-based fingerprinting analysis
Pulsed field gel electrophoresis (PFGE) is currently the most widely and routinely used method by the Centers for Disease Control and Prevention (CDC) and state health labs in the United States for Salmonella sur...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S15 -
Drug activity prediction using multiple-instance learning via joint instance and feature selection
In drug discovery and development, it is crucial to determine which conformers (instances) of a given molecule are responsible for its observed biological activity and at the same time to recognize the most re...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S16 -
mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis
Experimentally validated co-expression correlations between miRNAs and genes are a valuable resource to corroborate observations about miRNA/mRNA changes after experimental perturbations, as well as compare mi...
Citation: BMC Bioinformatics 2013 14(Suppl 14):S17
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Citation Impact 2023
Journal Impact Factor: 2.9
5-year Journal Impact Factor: 3.6
Source Normalized Impact per Paper (SNIP): 0.821
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