Volume 15 Supplement 10

UT-KBRIN Bioinformatics Summit 2014: Abstracts

Poster presentation

Edited by Eric C Rouchka and Julia H Chariker

The publication charges for this supplement were funded by the National Institutes of Health. The Supplement Editors declare that they have no competing interests.

UT-KBRIN Bioinformatics Summit 2014. Go to conference site.

Cadiz, KY, USA11-13 April 2014

Concatenated PDF 15S10

Proceedings of the Thirteenth Annual UT- KBRIN Bioinformatics Summit 2014

Authors: Eric C Rouchka and Julia H Chariker

Citation: BMC Bioinformatics 2014 15(Suppl 10):I1

Content type: Meeting report Published on: 26 September 2014
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CLIP-EZ: a computational tool for HITS-CLIP data analysis

Authors: Xue Zhong, Qi Liu and Yu Shyr

Citation: BMC Bioinformatics 2014 15(Suppl 10):P1

Content type: Poster presentation Published on: 29 September 2014
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Automating deployment of several GBrowse instances

Authors: Neil Moore, Jerzy W Jaromczyk, Christopher L Schardl, Joedocei Hill and Devin Wright

Citation: BMC Bioinformatics 2014 15(Suppl 10):P2

Content type: Poster presentation Published on: 29 September 2014
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Genome wide analysis of sex difference in gene expression profiles of bone formations

Authors: Yue Huang, Xiaodong Zhu, Lishi Wang, Xiaoyun Liu, Robert W Williams, Lu Lu, Yan Jiao and Weikuan Gu

Citation: BMC Bioinformatics 2014 15(Suppl 10):P3

Content type: Poster presentation Published on: 29 September 2014
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Screening genome-wide DNA methylation CpG sites via training and testing data utilizing surrogate variables

Authors: Meredith Ray, Xin Tong, Hongmei Zhang and Wilfred Karmaus

Citation: BMC Bioinformatics 2014 15(Suppl 10):P4

Content type: Poster presentation Published on: 29 September 2014
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Transcriptomic characterization of short duration endoplasmic reticulum stress on cultured human proximal tubule cells

Authors: Yan Zhang, Michelle Barati, Ignacio Munoz, Ming Li, Danny Wilkey, Eric Rouchka and Michael Merchant

Citation: BMC Bioinformatics 2014 15(Suppl 10):P5

Content type: Poster presentation Published on: 29 September 2014
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Obnet: Network of semantic associations for obesity

Authors: Hossein Taghizad, Mohammad Yeasin, Tara Cherry and Vida Abedi

Citation: BMC Bioinformatics 2014 15(Suppl 10):P6

Content type: Poster presentation Published on: 29 September 2014
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Prioritizing disease-related genes and pathways by integrating patient-specific iPSC-derived RNA-seq and whole genome sequencing in hypoplastic left heart syndrome

Authors: Xing Li, Almudena Martinez-Fernandez, Jeanne Theis, Jean-Pierre Kocher, Andre Terzic, Timothy Olson and Timothy J Nelson

Citation: BMC Bioinformatics 2014 15(Suppl 10):P7

Content type: Poster presentation Published on: 29 September 2014
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Context-sensitive use of bioinformatics tools with complementary functionalities for generation of relevant hypothesis

Authors: Vida Abedi, Mohammed Yeasin and Ramin Zand

Citation: BMC Bioinformatics 2014 15(Suppl 10):P8

Content type: Poster presentation Published on: 29 September 2014
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Comparing genetic pathways variation of immunoinhibitory receptor LAIR-1 in murine vs human internal organs

Authors: Shuqiu Sun, Yan Jiao, Wei Wei, Arnold E Postlethwaite, Weikuan Gu and Dianjun Sun

Citation: BMC Bioinformatics 2014 15(Suppl 10):P9

Content type: Poster presentation Published on: 29 September 2014
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Analysis of effect of congenic mice on the gene expression under genomic background of BALB/c mice

Authors: Yan Jiao, Xiaoyun Liu, Yanhong Cao, Nan Deng, Yonghui Ma, Karen A Hasty, John M Stuart and Weikuan Gu

Citation: BMC Bioinformatics 2014 15(Suppl 10):P10

Content type: Poster presentation Published on: 29 September 2014
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UTR extension and alternate polyadenylation in neuroplasticity: an emerging paradigm?

Authors: Benjamin J Harrison, Robert M Flight, Abdallah M Eteleeb, Eric C Rouchka and Jeffrey C Petruska

Citation: BMC Bioinformatics 2014 15(Suppl 10):P11

Content type: Poster presentation Published on: 29 September 2014
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Ttn as a likely causal gene for QTL of alcohol preference on mouse chromosome 2

Authors: Lishi Wang, Yan Jiao, Yue Huang, Beth Bennett, Robert W Williams, Dawei Li, Hongyu Zhao, Joel Gelernter, Henry R Kranzler, Lindsay A Farrer and Weikuan Gu

Citation: BMC Bioinformatics 2014 15(Suppl 10):P12

Content type: Poster presentation Published on: 29 September 2014
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Identifying candidate genes for variation in sleep-related quantitative traits

Authors: Shreyas Joshi and Bruce O'Hara

Citation: BMC Bioinformatics 2014 15(Suppl 10):P13

Content type: Poster presentation Published on: 29 September 2014
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Development of sparse Bayesian multinomial generalized linear model for multi-class prediction

Authors: Behrouz Madahian, Lih Y Deng and Ramin Homayouni

Citation: BMC Bioinformatics 2014 15(Suppl 10):P14

Content type: Poster presentation Published on: 29 September 2014
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Parameter estimations of sigmoidal models of cancer

Authors: Ferhan M Atici, Mustafa Atici and Ngoc Nguyen

Citation: BMC Bioinformatics 2014 15(Suppl 10):P15

Content type: Poster presentation Published on: 29 September 2014
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Heatmap3: an improved heatmap package with more powerful and convenient features

Authors: Shilin Zhao, Yan Guo, Quanhu Sheng and Yu Shyr

Citation: BMC Bioinformatics 2014 15(Suppl 10):P16

Content type: Poster presentation Published on: 29 September 2014
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Building a knowledge base to assist clinical decision-making using the Pediatric Research Database (PRD) and machine learning: a case study on pediatric asthma patients

Authors: Naga Nagisetty, Eunice Y Huang, Grady Wade and Teeradache Viangteeravat

Citation: BMC Bioinformatics 2014 15(Suppl 10):P17

Content type: Poster presentation Published on: 29 September 2014
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Differences in gene expression profiles between individual islets from case #6213

Authors: Nataliya I Lenchik, Hao Chen, Dorothy N Kakoola and Ivan C Gerling

Citation: BMC Bioinformatics 2014 15(Suppl 10):P18

Content type: Poster presentation Published on: 29 September 2014
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Exploiting the bootstrap method to analyze patterns of gene expression

Authors: Nam S Vo and Vinhthuy Phan

Citation: BMC Bioinformatics 2014 15(Suppl 10):P19

Content type: Poster presentation Published on: 29 September 2014
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Identification of gene expression profiles associated with prognostic groups of patients with Merkel cell carcinoma

Authors: Vinay Raj and Susan Kadlubar

Citation: BMC Bioinformatics 2014 15(Suppl 10):P20

Content type: Poster presentation Published on: 29 September 2014
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Transcriptome profile of OVCAR3 cisplatin-resistant ovarian cancer cell line

Authors: Shruti S Sakhare, Gautam G Rao, Sammed N Mandape and Siddharth Pratap

Citation: BMC Bioinformatics 2014 15(Suppl 10):P21

Content type: Poster presentation Published on: 29 September 2014
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A distributed framework for aligning short reads to genomes

Authors: Shanshan Guo and Vinthuy Phan

Citation: BMC Bioinformatics 2014 15(Suppl 10):P22

Content type: Poster presentation Published on: 29 September 2014
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Alignment of short reads to multiple genomes using hashing

Authors: Quang Tran and Vinhthuy Phan

Citation: BMC Bioinformatics 2014 15(Suppl 10):P23

Content type: Poster presentation Published on: 29 September 2014
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Determining gene response patterns of time series gene expression data using R

Authors: Kevin L O’kello and Vinhthuy Phan

Citation: BMC Bioinformatics 2014 15(Suppl 10):P24

Content type: Poster presentation Published on: 29 September 2014
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An adaptive landscape for training in the essentials of next gen sequencing data acquisition and bioinformatic analysis

Authors: Mark Farman, Patrick Calie, Jerzy Jaromczyk, Jolanta Jaromczyk, Neil Moore, Daniel Harris and Chris Schardl

Citation: BMC Bioinformatics 2014 15(Suppl 10):P25

Content type: Poster presentation Published on: 29 September 2014
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Evaluating statistical learning methods for cell type classification and feature selection using RNA-seq data

Authors: Hao Chen

Citation: BMC Bioinformatics 2014 15(Suppl 10):P26

Content type: Poster presentation Published on: 29 September 2014
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Establishing a protocol for single cell transcriptome sequencing of the rat brain

Authors: Hao Chen and Burt M Sharp

Citation: BMC Bioinformatics 2014 15(Suppl 10):P27

Content type: Poster presentation Published on: 29 September 2014
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Gene expression signature in adipose tissue of acromegaly patients

Authors: Irit Hochberg, Quynh T Tran, Ariel R Barkan, Alan R Saltiel, William F Chandler and Dave Bridges

Citation: BMC Bioinformatics 2014 15(Suppl 10):P28

Content type: Poster presentation Published on: 29 September 2014
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A new set-valued system identification approach to identifying rare genetic variants for ordered categorical phenotype

Authors: Wenjian Bi, Guolian Kang, Yuehua Cui, Yun Li, Christine M Hartford, Wing Leung and Ji-Feng Zhang

Citation: BMC Bioinformatics 2014 15(Suppl 10):P29

Content type: Poster presentation Published on: 29 September 2014
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An integrated approach for SNP calling based on population of genomes

Authors: Nam S Vo, Quang Tran and Vinhthuy Phan

Citation: BMC Bioinformatics 2014 15(Suppl 10):P30

Content type: Poster presentation Published on: 29 September 2014
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Coordination characterization of zinc metalloproteins

Authors: Sen Yao, Robert M Flight and Hunter NB Moseley

Citation: BMC Bioinformatics 2014 15(Suppl 10):P31

Content type: Poster presentation Published on: 29 September 2014
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Algorithmic tools for tripartite data analysis

Authors: Charles A Phillips, Erich J Baker, Elissa J Chesler and Michael A Langston

Citation: BMC Bioinformatics 2014 15(Suppl 10):P32

Content type: Poster presentation Published on: 29 September 2014
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Evaluating four major algorithms for identifying differential regulators in condition-specific transcriptional responses

Authors: Hui Yu and Zhongming Zhao

Citation: BMC Bioinformatics 2014 15(Suppl 10):P33

Content type: Poster presentation Published on: 29 September 2014
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Evaluation of two-step iterative resampling procedure for internal validation of genome-wide association studies

Authors: Guolian Kang, Wei Liu, Cheng Cheng, Carmen L Wilson, Geoffrey Neale, Jun J Yang, Kirsten K Ness, Leslie L Robison, Melissa M Hudson and Kumar Srivastava

Citation: BMC Bioinformatics 2014 15(Suppl 10):P34

Content type: Poster presentation Published on: 29 September 2014
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Shotgun proteomic analysis of human head and neck squamous cell carcinoma cell line SQ20B with diminished AHSG expression

Authors: Georgina Iyamu, Pamela Thompson, Victor Paramov, Siddharth Pratap, Amos Sakwe, Josiah Ochieng and Dana Marshall

Citation: BMC Bioinformatics 2014 15(Suppl 10):P35

Content type: Poster presentation Published on: 29 September 2014
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Development of large-scale metabolite identification methods for metabolomics

Authors: Joshua M Mitchell, Teresa W-M Fan, Andrew N Lane and Hunter NB Moseley

Citation: BMC Bioinformatics 2014 15(Suppl 10):P36

Content type: Poster presentation Published on: 29 September 2014
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UT-KBRIN Bioinformatics Summit 2014: Abstracts

Poster presentation

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