Edited by Jonathan Wren, Ramin Homayouni, Robert Doerksen, Inimary Toby, Prashanti Manda, Shraddha Thakkar, Bindu Nanduri.
Citation: BMC Bioinformatics 2019 20(Suppl 2):95
Volume 20 Supplement 2
Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.
Starkville, MS, USAMarch 29 - 31 2018
Edited by Jonathan Wren, Ramin Homayouni, Robert Doerksen, Inimary Toby, Prashanti Manda, Shraddha Thakkar, Bindu Nanduri.
Citation: BMC Bioinformatics 2019 20(Suppl 2):95
Several methods to handle data generated from bottom-up proteomics via liquid chromatography-mass spectrometry, particularly for peptide-centric quantification dealing with post-translational modification (PTM...
Citation: BMC Bioinformatics 2019 20(Suppl 2):102
Reference genome selection is a prerequisite for successful analysis of next generation sequencing (NGS) data. Current practice employs one of the two most recent human reference genome versions: HG19 or HG38....
Citation: BMC Bioinformatics 2019 20(Suppl 2):101
Gene co-expression studies can provide important insights into molecular and cellular signaling pathways. The GeneNetwork database is a unique resource for co-expression analysis using data from a variety of t...
Citation: BMC Bioinformatics 2019 20(Suppl 2):104
Barrett’s esophagus (BE) is most commonly seen as the condition in which the normal squamous epithelium lining of the esophagus is replaced by goblet cells. Many studies show that BE is a predisposing factor f...
Citation: BMC Bioinformatics 2019 20(Suppl 2):98
The number of publicly available metagenomic experiments in various environments has been rapidly growing, empowering the potential to identify similar shifts in species abundance between different experiments...
Citation: BMC Bioinformatics 2019 20(Suppl 2):96
Gene families are sets of structurally and evolutionarily related genes – in one or multiple species – that typically share a conserved biological function. As such, the identification and subsequent analyses ...
Citation: BMC Bioinformatics 2019 20(Suppl 2):99
Dermoscopy is one of the common and effective imaging techniques in diagnosis of skin cancer, especially for pigmented lesions. Accurate skin lesion border detection is the key to extract important dermoscopic...
Citation: BMC Bioinformatics 2019 20(Suppl 2):91
This paper presents a novel approach for Generative Anatomy Modeling Language (GAML). This approach automatically detects the geometric partitions in 3D anatomy that in turn speeds up integrated non-linear opt...
Citation: BMC Bioinformatics 2019 20(Suppl 2):105
The ability to predict which pairs of amino acid residues in a protein are in contact with each other offers many advantages for various areas of research that focus on proteins. For example, contact predictio...
Citation: BMC Bioinformatics 2019 20(Suppl 2):100
Adverse Drug Reactions (ADRs) are of great public health concern. FDA-approved drug labeling summarizes ADRs of a drug product mainly in three sections, i.e., Boxed Warning (BW), Warnings and Precautions (WP),...
Citation: BMC Bioinformatics 2019 20(Suppl 2):97
One of the main challenges when analyzing complex metagenomics data is the fact that large amounts of information need to be presented in a comprehensive and easy-to-navigate way. In the process of analyzing F...
Citation: BMC Bioinformatics 2019 20(Suppl 2):103
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