UT-ORNL-KBRIN Bioinformatics Summit 2009

Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009

Eric C Rouchka and Julia Krushkal

BMC Bioinformatics 2009 10(Suppl 7):I1

Published on: 25 June 2009

Prediction of peptide drift time in ion mobility-mass spectrometry

Bing Wang, Steve Valentine, Sriram Raghuraman, Manolo Plasencia and Xiang Zhang

BMC Bioinformatics 2009 10(Suppl 7):A1

Published on: 25 June 2009

Fuzzy rule based unsupervised approach for gene saliency

Nishchal K Verma, Pooja Agrawal and Yan Cui

BMC Bioinformatics 2009 10(Suppl 7):A2

Published on: 25 June 2009

Parallelized pairwise sequence alignment using CUDA on multiple GPUs

Sungbo Jung

BMC Bioinformatics 2009 10(Suppl 7):A3

Published on: 25 June 2009

Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports

Elissaveta G Arnaoudova, Philip J Bowens, Roger G Chui, Randy D Dinkins, Uljana Hesse, Jerzy W Jaromczyk, Mitchell Martin, Paul Maynard, Neil Moore and Chris L Schardl

BMC Bioinformatics 2009 10(Suppl 7):A4

Published on: 25 June 2009

LSI based framework to predict gene regulatory information

Sujoy Roy, Lijing Xu and Ramin Homayouni

BMC Bioinformatics 2009 10(Suppl 7):A5

Published on: 25 June 2009

A systematic study on latent semantic analysis model parameters for mining biomedical literature

Mohammed Yeasin, Haritha Malempati, Ramin Homayouni and Mohammad Shahed Sorower

BMC Bioinformatics 2009 10(Suppl 7):A6

Published on: 25 June 2009

Reconstructing the virulome of the human pathogen Streptococcus pyogenes using NMPDR subsystems-based annotation

Ramy K Aziz and Leslie K Mcneil

BMC Bioinformatics 2009 10(Suppl 7):A7

Published on: 25 June 2009

Bioinformatics determination of ETEC signature genes as potential targets for molecular diagnosis and reverse vaccinology

Heba M Amin, Abdel-Gawad M Hashem and Ramy K Aziz

BMC Bioinformatics 2009 10(Suppl 7):A8

Published on: 25 June 2009

Bioinformatic analysis of gene regulation in Geobacter sulfurreducens

Julia Krushkal, Yanhua Qu, Peter Brown, Sreedhar Sontineni, Toshiyuki Ueki, Katy Juarez, Ching Leang, Enrique Merino, Jeanette Peeples, Jose F Barbe, Ronald M Adkins and Derek R Lovley

BMC Bioinformatics 2009 10(Suppl 7):A9

Published on: 25 June 2009

Comparison of annotation terms between automated and curated E. coli K12 databases

ReddySailaja Marpuri and Claire A Rinehart

BMC Bioinformatics 2009 10(Suppl 7):A10

Published on: 25 June 2009

Slim-Prim: an integrated data system for clinical and translational research

Teeradache Viangteeravat, Ian Brooks, Somchan Vuthipadadon, Eunice Huang, Ebony Smith, Ramin Homayouni and Chanchai McDonald

BMC Bioinformatics 2009 10(Suppl 7):A11

Published on: 25 June 2009

Microarray analysis and quantitative real-time PCR validation of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio)

Julie B Schuck, Chia-Hui Lin, William T Penberthy, Xiaohong Li, Nigel GF Cooper and Michael E Smith

BMC Bioinformatics 2009 10(Suppl 7):A12

Published on: 25 June 2009

Extensive parent-of-origin genetic effects on fetal growth

Ronald M Adkins, Julia Krushkal, Grant Somes, John Fain, John Morrison, Chad Klauser and Everett F Magann

BMC Bioinformatics 2009 10(Suppl 7):A13

Published on: 25 June 2009

Molecular dissection of cardiac hypertrophy induced by interleukin-18

Sirshendu Majumdar, I Maria Johnson, Gipsy Majumdar, William J Valentine and Rajendra Raghow

BMC Bioinformatics 2009 10(Suppl 7):A14

Published on: 25 June 2009

Transcriptional profiling of CD4 T-lymphocytes reveals abnormal gene expression in young prediabetic NOD mice

Dorothy N Kakoola, Nataliya I Lenchik, Anita Curcio-Brint and Ivan C Gerling

BMC Bioinformatics 2009 10(Suppl 7):A15

Published on: 25 June 2009

Utilizing a mixed model approach to compare the lactating rat transcriptome against age-matched control virgins

Antony T Athippozhy, Liping Huang, Tianyong Zhao, Clavia Ruth Wooton-Kee, Paiboon Jungsuwadee, Arnold J Stromberg and Mary Vore

BMC Bioinformatics 2009 10(Suppl 7):A16

Published on: 25 June 2009

Motif Tool Manager: a web-based platform for motif discovery

Vinhthuy Phan

BMC Bioinformatics 2009 10(Suppl 7):A17

Published on: 25 June 2009

Flipping NextGen: using biological systems to characterize NextGen sequencing technologies

Jarret Glasscock, Ryan Richt and Matt Hickenbotham

BMC Bioinformatics 2009 10(Suppl 7):A18

Published on: 25 June 2009