Volume 10 Supplement 7

UT-ORNL-KBRIN Bioinformatics Summit 2009

Meeting abstracts

Edited by Eric C Rouchka and Julia Krushkal

UT-ORNL-KBRIN Bioinformatics Summit 2009. Go to conference site.

Pikeville, TN, USA20-22 March 2009

Concatenated PDF 10S7

Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009

Authors: Eric C Rouchka and Julia Krushkal

Citation: BMC Bioinformatics 2009 10(Suppl 7):I1

Content type: Meeting report Published on: 25 June 2009
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Prediction of peptide drift time in ion mobility-mass spectrometry

Authors: Bing Wang, Steve Valentine, Sriram Raghuraman, Manolo Plasencia and Xiang Zhang

Citation: BMC Bioinformatics 2009 10(Suppl 7):A1

Content type: Meeting abstract Published on: 25 June 2009
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Fuzzy rule based unsupervised approach for gene saliency

Authors: Nishchal K Verma, Pooja Agrawal and Yan Cui

Citation: BMC Bioinformatics 2009 10(Suppl 7):A2

Content type: Meeting abstract Published on: 25 June 2009
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Parallelized pairwise sequence alignment using CUDA on multiple GPUs

Authors: Sungbo Jung

Citation: BMC Bioinformatics 2009 10(Suppl 7):A3

Content type: Meeting abstract Published on: 25 June 2009
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Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports

Authors: Elissaveta G Arnaoudova, Philip J Bowens, Roger G Chui, Randy D Dinkins, Uljana Hesse, Jerzy W Jaromczyk, Mitchell Martin, Paul Maynard, Neil Moore and Chris L Schardl

Citation: BMC Bioinformatics 2009 10(Suppl 7):A4

Content type: Meeting abstract Published on: 25 June 2009
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LSI based framework to predict gene regulatory information

Authors: Sujoy Roy, Lijing Xu and Ramin Homayouni

Citation: BMC Bioinformatics 2009 10(Suppl 7):A5

Content type: Meeting abstract Published on: 25 June 2009
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A systematic study on latent semantic analysis model parameters for mining biomedical literature

Authors: Mohammed Yeasin, Haritha Malempati, Ramin Homayouni and Mohammad Shahed Sorower

Citation: BMC Bioinformatics 2009 10(Suppl 7):A6

Content type: Meeting abstract Published on: 25 June 2009
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Reconstructing the virulome of the human pathogen Streptococcus pyogenes using NMPDR subsystems-based annotation

Authors: Ramy K Aziz and Leslie K Mcneil

Citation: BMC Bioinformatics 2009 10(Suppl 7):A7

Content type: Meeting abstract Published on: 25 June 2009
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Bioinformatics determination of ETEC signature genes as potential targets for molecular diagnosis and reverse vaccinology

Authors: Heba M Amin, Abdel-Gawad M Hashem and Ramy K Aziz

Citation: BMC Bioinformatics 2009 10(Suppl 7):A8

Content type: Meeting abstract Published on: 25 June 2009
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Bioinformatic analysis of gene regulation in Geobacter sulfurreducens

Authors: Julia Krushkal, Yanhua Qu, Peter Brown, Sreedhar Sontineni, Toshiyuki Ueki, Katy Juarez, Ching Leang, Enrique Merino, Jeanette Peeples, Jose F Barbe, Ronald M Adkins and Derek R Lovley

Citation: BMC Bioinformatics 2009 10(Suppl 7):A9

Content type: Meeting abstract Published on: 25 June 2009
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Comparison of annotation terms between automated and curated E. coli K12 databases

Authors: ReddySailaja Marpuri and Claire A Rinehart

Citation: BMC Bioinformatics 2009 10(Suppl 7):A10

Content type: Meeting abstract Published on: 25 June 2009
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Slim-Prim: an integrated data system for clinical and translational research

Authors: Teeradache Viangteeravat, Ian Brooks, Somchan Vuthipadadon, Eunice Huang, Ebony Smith, Ramin Homayouni and Chanchai McDonald

Citation: BMC Bioinformatics 2009 10(Suppl 7):A11

Content type: Meeting abstract Published on: 25 June 2009
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Microarray analysis and quantitative real-time PCR validation of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio)

Authors: Julie B Schuck, Chia-Hui Lin, William T Penberthy, Xiaohong Li, Nigel GF Cooper and Michael E Smith

Citation: BMC Bioinformatics 2009 10(Suppl 7):A12

Content type: Meeting abstract Published on: 25 June 2009
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Extensive parent-of-origin genetic effects on fetal growth

Authors: Ronald M Adkins, Julia Krushkal, Grant Somes, John Fain, John Morrison, Chad Klauser and Everett F Magann

Citation: BMC Bioinformatics 2009 10(Suppl 7):A13

Content type: Meeting abstract Published on: 25 June 2009
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Molecular dissection of cardiac hypertrophy induced by interleukin-18

Authors: Sirshendu Majumdar, I Maria Johnson, Gipsy Majumdar, William J Valentine and Rajendra Raghow

Citation: BMC Bioinformatics 2009 10(Suppl 7):A14

Content type: Meeting abstract Published on: 25 June 2009
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Transcriptional profiling of CD4 T-lymphocytes reveals abnormal gene expression in young prediabetic NOD mice

Authors: Dorothy N Kakoola, Nataliya I Lenchik, Anita Curcio-Brint and Ivan C Gerling

Citation: BMC Bioinformatics 2009 10(Suppl 7):A15

Content type: Meeting abstract Published on: 25 June 2009
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Utilizing a mixed model approach to compare the lactating rat transcriptome against age-matched control virgins

Authors: Antony T Athippozhy, Liping Huang, Tianyong Zhao, Clavia Ruth Wooton-Kee, Paiboon Jungsuwadee, Arnold J Stromberg and Mary Vore

Citation: BMC Bioinformatics 2009 10(Suppl 7):A16

Content type: Meeting abstract Published on: 25 June 2009
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Motif Tool Manager: a web-based platform for motif discovery

Authors: Vinhthuy Phan

Citation: BMC Bioinformatics 2009 10(Suppl 7):A17

Content type: Meeting abstract Published on: 25 June 2009
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Flipping NextGen: using biological systems to characterize NextGen sequencing technologies

Authors: Jarret Glasscock, Ryan Richt and Matt Hickenbotham

Citation: BMC Bioinformatics 2009 10(Suppl 7):A18

Content type: Meeting abstract Published on: 25 June 2009
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UT-ORNL-KBRIN Bioinformatics Summit 2009

Meeting abstracts

Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009

Prediction of peptide drift time in ion mobility-mass spectrometry

Fuzzy rule based unsupervised approach for gene saliency

Parallelized pairwise sequence alignment using CUDA on multiple GPUs

Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports

LSI based framework to predict gene regulatory information

A systematic study on latent semantic analysis model parameters for mining biomedical literature

Reconstructing the virulome of the human pathogen Streptococcus pyogenes using NMPDR subsystems-based annotation

Bioinformatics determination of ETEC signature genes as potential targets for molecular diagnosis and reverse vaccinology

Bioinformatic analysis of gene regulation in Geobacter sulfurreducens

Comparison of annotation terms between automated and curated E. coli K12 databases

Slim-Prim: an integrated data system for clinical and translational research

Microarray analysis and quantitative real-time PCR validation of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio)

Extensive parent-of-origin genetic effects on fetal growth

Molecular dissection of cardiac hypertrophy induced by interleukin-18

Transcriptional profiling of CD4 T-lymphocytes reveals abnormal gene expression in young prediabetic NOD mice

Utilizing a mixed model approach to compare the lactating rat transcriptome against age-matched control virgins

Motif Tool Manager: a web-based platform for motif discovery

Flipping NextGen: using biological systems to characterize NextGen sequencing technologies

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